Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_011811.1 Length=84576 Score E Sequences producing significant alignments: (Bits) Value seq285293 84.2 1e-11 seq281258 84.2 1e-11 seq136596 84.2 1e-11 seq120455 84.2 1e-11 seq90784 84.2 1e-11 seq309619 82.4 4e-11 seq158439 82.4 4e-11 >seq285293 Length=81 Score = 84.2 bits (92), Expect = 1e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 22491 GCGGGATGGAGCAGTGGTAGCTTGCCAGTTTCATTATCTGGAGGTCGTAGGTTCGAATCC 22550 ||||||| |||||||||||||| ||| ||| ||||||| ||||||||||||||||| Sbjct 8 GCGGGATAGAGCAGTGGTAGCTCAACAGGCTCACGATCTGGATGTCGTAGGTTCGAATCC 67 Query 22551 TACTCCCGC 22559 ||||||||| Sbjct 68 TACTCCCGC 76 >seq281258 Length=81 Score = 84.2 bits (92), Expect = 1e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 22491 GCGGGATGGAGCAGTGGTAGCTTGCCAGTTTCATTATCTGGAGGTCGTAGGTTCGAATCC 22550 ||||||| |||||||||||||| ||| |||| ||||| | ||||||||||||||||| Sbjct 1 GCGGGATAGAGCAGTGGTAGCTCAACAGGCTCATGATCTGTATGTCGTAGGTTCGAATCC 60 Query 22551 TACTCCCGC 22559 ||||||||| Sbjct 61 TACTCCCGC 69 >seq136596 Length=81 Score = 84.2 bits (92), Expect = 1e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 22491 GCGGGATGGAGCAGTGGTAGCTTGCCAGTTTCATTATCTGGAGGTCGTAGGTTCGAATCC 22550 ||||||| |||||||||||||| ||| |||| ||||| | ||||||||||||||||| Sbjct 1 GCGGGATAGAGCAGTGGTAGCTCAACAGGCTCATGATCTGCATGTCGTAGGTTCGAATCC 60 Query 22551 TACTCCCGC 22559 ||||||||| Sbjct 61 TACTCCCGC 69 >seq120455 Length=81 Score = 84.2 bits (92), Expect = 1e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 22491 GCGGGATGGAGCAGTGGTAGCTTGCCAGTTTCATTATCTGGAGGTCGTAGGTTCGAATCC 22550 ||||||| |||||||||||||| ||| |||| |||||| ||||||||||||||||| Sbjct 6 GCGGGATAGAGCAGTGGTAGCTCAACAGGCTCATGCTCTGGATGTCGTAGGTTCGAATCC 65 Query 22551 TACTCCCGC 22559 ||||||||| Sbjct 66 TACTCCCGC 74 >seq90784 Length=81 Score = 84.2 bits (92), Expect = 1e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 22491 GCGGGATGGAGCAGTGGTAGCTTGCCAGTTTCATTATCTGGAGGTCGTAGGTTCGAATCC 22550 ||||||| |||||||||||||| ||| |||| |||| || ||||||||||||||||| Sbjct 2 GCGGGATAGAGCAGTGGTAGCTCAACAGGCTCATGATCTTGATGTCGTAGGTTCGAATCC 61 Query 22551 TACTCCCGC 22559 ||||||||| Sbjct 62 TACTCCCGC 70 >seq309619 Length=81 Score = 82.4 bits (90), Expect = 4e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 22491 GCGGGATGGAGCAGTGGTAGCTTGCCAGTTTCATTATCTGGAGGTCGTAGGTTCGAATCC 22550 ||||||| |||||||||||||| ||| |||| ||||||| ||||||||||||||||| Sbjct 65 GCGGGATAGAGCAGTGGTAGCTCAGCAGGCTCATGATCTGGATGTCGTAGGTTCGAATCC 6 Query 22551 TACTC 22555 ||||| Sbjct 5 TACTC 1 >seq158439 Length=81 Score = 82.4 bits (90), Expect = 4e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 22491 GCGGGATGGAGCAGTGGTAGCTTGCCAGTTTCATTATCTGGAGGTCGTAGGTTCGAATCC 22550 ||||||| |||||||||||||| || |||| ||||||| ||||||||||||||||| Sbjct 14 GCGGGATAGAGCAGTGGTAGCTCAACATGCTCATGATCTGGATGTCGTAGGTTCGAATCC 73 Query 22551 TACTCCCG 22558 |||||||| Sbjct 74 TACTCCCG 81 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 269489809832031