Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq8846 118 1e-21 seq19842 111 2e-19 seq131199 86.0 8e-12 >seq8846 Length=717 Score = 118 bits (130), Expect = 1e-21 Identities = 442/682 (65%), Gaps = 26/682 (4%) Strand=Plus/Plus Query 116307 GGTCTCCACG---GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAAC 116363 || ||||||| || ||| | || | ||||| ||| | || || || | || || || Sbjct 12 GGCCTCCACGACAGGGTAATAGTTGATGTCGATGACCTTGTTAAGGTTCCTTGTCACTAC 71 Query 116364 CTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTT 116423 ||| | ||| || | || || || |||| | | || || || | || ||| | Sbjct 72 CTTGGAGATCTCCTTGAGGTTATCAAAATCGTAGGTCCGTGTATCGTTGTTTACAAAGGA 131 Query 116424 AGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTAT 116483 | ||| ||| || || || || ||||||| | ||| || |||||||||| || Sbjct 132 CGCGAGGTTGATAGAAGCAAGGTTGCACACAGCGACCTCGTCAGGGGCAGTGTACTCGAT 191 Query 116484 AATTTCCGTACACAAATT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTT 116541 || || || || | ||| || | | | ||||| |||| |||| |||||| || || Sbjct 192 GATCTCTGTGCAAAGATTGCTGGATT--TGATGGTCCCCAGATTCTGTTGATTAGATTTC 249 Query 116542 GTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGA 116601 ||| || |||||||| ||||| || || || || ||||| | ||||| | || Sbjct 250 CGGTTGCAGTGGTCCTTGTACAGCATGTAAGGGGTGCCAGTCTCAATCTGGGAATCTAGG 309 Query 116602 ATAGCCTTCCATACATCGGCGGCTG-GCA--CAGTGGCGTTGGCTCGCC---CCTCCTC- 116654 || || ||| | || |||| || || | || || ||| ||| ||| Sbjct 310 ATCGCAAACCAGA-----GCTGCTGAGCCTTCACCACCCTT--CTTGCCTTTCCTTCTCT 362 Query 116655 CTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCC-ACAGCCTCTGAGAGCCCTGGTG 116713 ||| ||||| || || ||||||||||| || ||| ||| | || | | |||| | Sbjct 363 CTCATACTTCTCATAAAGAGCCTCAAACTCGTCTCCCCACA-CGTCAGGTAACCCTCGGC 421 Query 116714 CCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGT 116773 || | || ||||| |||||||| | || | | | || || ||||||||||||| Sbjct 422 ACTCGTTAGGGCAGAACAGAGACCACTCGCCGTTCGCTTGTACGCGTTTCATGAAGAGGT 481 Query 116774 CTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGA 116833 |||| ||||| | || |||| | ||| | |||| ||||| || ||||| Sbjct 482 CTGGAATCCACATAGCGTAGAATAAATCTCTGGCGCGATGAAGTTCATTGCCATGATTCT 541 Query 116834 GACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG 116893 ||| |||||||| || | || || || ||||| || || ||||||| || | || Sbjct 542 TTTTCAAGTCCAAAAACTCGAATATGTCGGCATGCCAAGGCTCAAGGTACATAGCAAATG 601 Query 116894 ACCCCTTGCG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAA 116950 | |||||||| | ||| |||| | ||| || || || || |||| || || | | Sbjct 602 AGCCCTTGCGCTTGCCTCCACCCTGATCTACGTATCTAGCAGTATCGTTGAAGACCCTCA 661 Query 116951 GCATTGGAATGATACCATCAGA 116972 |||| || | || |||| ||| Sbjct 662 GCATAGGGACAATGCCATTAGA 683 >seq19842 Length=884 Score = 111 bits (122), Expect = 2e-19 Identities = 286/427 (67%), Gaps = 8/427 (2%) Strand=Plus/Minus Query 127225 CTTGCCGTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATT 127284 |||| |||| ||||| || | |||||| |||||||| ||||| || | || || | Sbjct 510 CTTGGCGTACTCCCCTACTCTCTTCTCAAAGAAGTTGGTCTTGCCTTGAAGAGAAATCAT 451 Query 127285 CTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGG-CACCCCA-ATCTGTTTG 127342 ||||| | || || ||||| ||| | | | | | || || |||| | | | Sbjct 450 GTCCATCCAGTCGAAAGGGTTGCTTGCCTGGTAGAGTTTAGGGCAGCCCAGAGCACC--G 393 Query 127343 AGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATG 127402 || || | || | |||| |||||||||||| ||||| ||||||||||| || ||| Sbjct 392 AGCAGCCTGTCAGCGACGAACTCAATGTACTGGCACATCAGGTCAGAGTTCATGCCAATG 333 Query 127403 AGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACG 127462 || | | || | || ||| || |||| | || || ||| | || || || | Sbjct 332 AGCTCAACAGGCAAAGCATCCTTGACGAACTCTTTTTCGATGGCGACGGCGTCTGCAATA 273 Query 127463 ATGGCGTGAATAGTGTCCACCC-CAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAG- 127520 || | ||||| |||| ||| | | ||| || |||| | | | |||| Sbjct 272 ATAGTCTGAATTCTGTCATTGGGCAGCT-TGTTGACTAGCTTCTTATACA-TCAAACAGG 215 Query 127521 CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTG 127580 | || || ||| || ||||| || ||| ||| || || || || ||||| || |||| Sbjct 214 CGAAGTCACAGTGAAGGCCCTCATCCCGGCTGATAAGCTCGTTGGAAAAGCAGAGTCCTG 155 Query 127581 GCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCC 127640 |||||||||| |||||||| | |||||| || | ||||| || |||||||| ||||| | Sbjct 154 GCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGATCCAGAGAAAAAGATGC 95 Query 127641 CCTCCAC 127647 |||| || Sbjct 94 CCTCAAC 88 >seq131199 Length=545 Score = 86.0 bits (94), Expect = 8e-12 Identities = 269/416 (65%), Gaps = 8/416 (2%) Strand=Plus/Plus Query 175748 CCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGAAG 175807 ||||| ||||| || ||| ||||||| || || ||| || | |||| | || | Sbjct 127 CCTGTTCCAATGCCATCGCTGCCGTTGACAAGGGCCAGAGGGATGATTGGTACGTACCAC 186 Query 175808 TCTGGTTCAATCGCACGCCCATCATCGTCCAAATAGTTGAGCACGGGGTCATCCCTCGGA 175867 | || ||||| | ||||| || ||||| ||||| || || ||||| || | | Sbjct 187 ACAGGCTCAATTCTTTGTCCATCCTCATCCAAGTAGTTCAGAACAGGGTCGTCATCTGCA 246 Query 175868 TCAAAGATTTTACGAGCATCCTTGGTGAGTTTTGTGAAGATGTACCTCGTTTGAGACGCA 175927 | ||||| | ||| | | || || || ||||||||||| | | | || Sbjct 247 TGGAAGATATGACGGGTAATGTTCTCCAGCTTGGTGAAGATGTAACGAGCACTGGCAGCG 306 Query 175928 TCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATTG 175987 || ||||| ||||| || ||||| || || ||||| | ||| | ||||| ||||| ||| Sbjct 307 TCCTTGCCGCCCATAAGTCGCGTACCGAACTGACCGCTTGGGACGAGGAGGTTGATGTTG 366 Query 175988 TTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCGCGAGGGAGACT----TC 176043 || || | ||||| | |||| || || || ||| | | | ||||| || Sbjct 367 TTGCTTCCAACATAGTTCTGAGCCATATTCACTATGGTA----CTATGTAGACTGGCCTC 422 Query 176044 ACCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCATCTC 176103 || || || || || || | || | |||||| | || ||||| | | | || ||| Sbjct 423 GCCATGGTGATAAGCAGAGTGCTCGGACACATAGCCAGCTAACTGTGAGATCCGCACCTC 482 Query 176104 ATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGA 176159 | ||| || || | | |||||| | ||| ||| || | || |||||||||| Sbjct 483 GTTCTTAAGTTTTCTCTTGAAGCAGCAAAACAAGACTTTCCGTTGAGAAGGCTTGA 538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611114652290280