Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq205478 140 8e-28 seq14360 102 2e-16 seq10776 86.0 1e-11 >seq205478 Length=785 Score = 140 bits (154), Expect = 8e-28 Identities = 142/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||||||||| |||||| |||| ||| ||||| | | ||| | |||||| Sbjct 332 AGAACGAGGTGGAGAGTGCTCTCCTTCTGGATGTTATAGTCGGAGAGAGTGCGGCCATCT 391 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || ||||||||||||||||||||||| ||| ||| || || ||| Sbjct 392 TCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 451 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||||||||||||||| |||| |||||| | | || ||||| | ||||| ||| Sbjct 452 TGAATCTTTTGCTTCACATTCTCGATGGTGTCCGAAGGCTCCACATCGAGAGTGATGGTC 511 Query 199598 TTACC 199602 || || Sbjct 512 TTGCC 516 >seq14360 Length=163 Score = 102 bits (112), Expect = 2e-16 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||||||||| || || |||||| || | ||| ||||||| | ||| | ||||| Sbjct 41 CAGGACAAGGTGAAGGGTGCTCTCCTTCTGAATGTTATAGTCAGAGAGAGTGCGGCCATC 100 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 ||||||||||| || ||||||||||||||||||||||| ||| ||| || || Sbjct 101 CTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGAATGCCCTC 154 >seq10776 Length=1512 Score = 86.0 bits (94), Expect = 1e-11 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||||||||| || || |||||| |||| ||| ||||| || ||| Sbjct 490 CGAAGGCGAAGGACAAGGTGAAGGGTGCTCTCCTTCTGGATGTTATAGTCGCTCAGAGTG 431 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || ||||||||||| || ||||| || |||||||| || ||| ||| ||| Sbjct 430 CGGCCATCCTCAAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGATCAGGAGGAATGCCT 371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1174209117687861