Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq125140 109 4e-18 seq182219 87.8 1e-11 >seq125140 Length=2305 Score = 109 bits (120), Expect = 4e-18 Identities = 215/316 (68%), Gaps = 4/316 (1%) Strand=Plus/Minus Query 635403 ATAATGCTCACAAGGCAGGAACCAAAGAAGGATATAAATGTACCCTAATTTTGACAGAGG 635462 || |||| |||| ||||||||| |||| | ||||| || || || | || || | Sbjct 2147 ATGATGCCAACAAAGCAGGAACCCGAGAATCCGAGAAATGCACTCTCATACTCACCGAAG 2088 Query 635463 GAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTAATGTTATTGGAAGAGATTATTATG 635522 ||||||| || || || | || || || ||||| | | |||| ||||| || |||| Sbjct 2087 GAGATTCCGCGAAGACCATGGCCATCTCGGGTCTAACCGAAGTTGGTAGAGACTACTATG 2028 Query 635523 GAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGGGATGCTAGTCCTaaaaaaaTTG 635582 | || ||||| || | ||| |||| | |||| || | |||||| | | || || ||| Sbjct 2027 GTGTCTTCCCTCTGAAAGGCAAACCTCTGAACGTCAAGGATGCCACTATCAAGAAGATTA 1968 Query 635583 CTGATAATGAGGAAATTACAGCAATCaaaaaaaTTGTTGGACTTGAA--CAAGGAAAAGT 635640 |||| ||||| || || | |||| || || |||| || ||| ||| || | Sbjct 1967 CTGACAATGATGAGATAGCTAACATCATGAAGATCATTGGCCTCGAAGTCAAT--AAGGA 1910 Query 635641 TTATGATGATCTCAAAGGTTTACGATATGGTAGTATTATGATTCTTGCTGATCAAGATGT 635700 || ||||||||| ||| ||||||| || | | || || ||||||||||| || Sbjct 1909 ATACAATGATCTCAGCCCTTTGAGATATGGCCGTCTGGTCATCCTGGCTGATCAAGACGT 1850 Query 635701 TGATGGGTACCATATC 635716 ||||| | |||||| Sbjct 1849 AGATGGATCTCATATC 1834 >seq182219 Length=425 Score = 87.8 bits (96), Expect = 1e-11 Identities = 194/287 (68%), Gaps = 7/287 (2%) Strand=Plus/Minus Query 517465 AGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACC 517524 ||| || || |||||||| | || | ||||||| | ||| || || || || | ||| Sbjct 381 AGGGATGGTGGTGTTTCTCTTGATGAGCGTGGTCATCACACCGCCAGCAGTCTCCAGACC 322 Query 517525 AAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTT--CATCAGT-TTG 517581 |||||| |||||||||||||| | || | | || ||||| || | | | || || Sbjct 321 AAGAGATAGAGGAGTGACATCCAGCAGAAGCAGATCCTGAAGCTTCTCGCTGCTGTCGTG 262 Query 517582 ACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAA- 517640 |||| || ||||| || || | | ||| ||||| |||||||| || || || || | Sbjct 261 ACCAGAGAGGATAGCAGCCTGGACGGTAGCGCCATAGGCAACAGCCTCGTCTGGGTTGAT 202 Query 517641 -CAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGA 517699 | || || | | | || || ||||| || | | ||||| || |||||||| Sbjct 201 GCTCTTGCA--TGGCTCCTTGCCGTTGAAGAAGTCCGTCAGAAGCTGCTGAACCTTAGGG 144 Query 517700 ATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTT 517746 ||||| | || ||||| || | || | ||||| ||||| || || Sbjct 143 ATACGGGTGGAGCCTCCGACAAGGACGACCTCATGGACCTGGGACTT 97 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3765340775867998