Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq205478 152 1e-31 seq27863 105 1e-17 seq14360 98.7 2e-15 seq101501 89.7 1e-12 seq3181 84.2 5e-11 >seq205478 Length=785 Score = 152 bits (168), Expect = 1e-31 Identities = 144/184 (78%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| ||||| |||||| ||| || || || || || |||| ||||| | |||||||| Sbjct 334 AACGAGGTGGAGAGTGCTCTCCTTCTGGATGTTATAGTCGGAGAGAGTGCGGCCATCTTC 393 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || |||||||| || || || ||||| ||||||||||| || ||||| || Sbjct 394 AAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTG 453 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| |||||||| || ||||| |||||||||||| ||||| || || || | ||||| Sbjct 454 AATCTTTTGCTTCACATTCTCGATGGTGTCCGAAGGCTCCACATCGAGAGTGATGGTCTT 513 Query 195111 TCCT 195114 ||| Sbjct 514 GCCT 517 >seq27863 Length=140 Score = 105 bits (116), Expect = 1e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 194959 ATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGT 195018 || ||||| || | ||| || | ||||| || |||||||| || |||||||| || || Sbjct 1 ATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGC 60 Query 195019 TGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTG 195078 || ||||| ||||| || || || ||||| || || || ||||| || |||||||||||| Sbjct 61 TGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTCTGCTTTACATTCTCAATGGTG 120 Query 195079 TCCGAA 195084 |||||| Sbjct 121 TCCGAA 126 >seq14360 Length=163 Score = 98.7 bits (108), Expect = 2e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| ||| ||| || ||||| || || || | ||||| | ||||| || Sbjct 45 ACAAGGTGAAGGGTGCTCTCCTTCTGAATGTTATAGTCAGAGAGAGTGCGGCCATCCTCC 104 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || |||||||| || || || ||||| ||||||||||| || ||||| || Sbjct 105 AGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTG 163 >seq101501 Length=122 Score = 89.7 bits (98), Expect = 1e-12 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 || || || ||||| ||||||||||| || ||||| ||||| |||||||| || ||||| Sbjct 120 AGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTTTGCTTCACATTCTCG 61 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCT 195114 |||||||||||| ||||| || || || | ||||| ||| Sbjct 60 ATGGTGTCCGAAGGCTCCACATCGAGAGTGATGGTCTTGCCT 19 >seq3181 Length=966 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 || || || ||||| ||||||||||| || ||||| || || |||||||| || ||||| Sbjct 964 AGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTTTGCTTCACATTCTCG 905 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCC 195113 ||||||||||| ||||| || ||||| | ||||| || Sbjct 904 ATGGTGTCCGAGGGCTCCACATCGAGGGTGATGGTCTTGCC 864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1105046688962961