Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq6469 105 5e-17 seq120225 87.8 1e-11 >seq6469 Length=903 Score = 105 bits (116), Expect = 5e-17 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || || || || || ||||| |||||||| || ||||||||||| || ||||| Sbjct 581 GCCGTCATCACCGTTCCTGCCTATTTCAATGACTCTCAGCGTCAAGCTACCAAGGATGCA 640 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 ||||| ||||| || || | ||||| | || ||||| || || || |||||||| || Sbjct 641 GGACGCATTGCCGGCCTGGACGTTCTAAGAATCATCAACGAGCCCACCGCTGCTGCTCTC 700 Query 550520 GCATATGGACTTGATAAA 550537 || |||||||| || ||| Sbjct 701 GCCTATGGACTGGACAAA 718 >seq120225 Length=1199 Score = 87.8 bits (96), Expect = 1e-11 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 550388 GAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCT 550447 || || | |||||| || | || || || ||||| || ||||| | || || || ||| Sbjct 1045 GACGTCAAGGATGCTGTGGTCACCGTCCCTGCATACTTCAATGATGCTCAGCGCCAGGCT 986 Query 550448 ACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACT 550507 || || |||||||| |||||||| || || || | ||||| ||||| || |||||| Sbjct 985 ACCAAGGATGCTGGTGTCATTGCTGGCCTCAAGGTCCAACGTATCATCAACGAGCCTACT 926 Query 550508 GCTGCTGCACTTGCATATGGACTTGA 550533 ||||||||| | || || || || || Sbjct 925 GCTGCTGCATTCGCCTACGGTCTGGA 900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4012796931916670