Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq19842 143 5e-29 >seq19842 Length=884 Score = 143 bits (158), Expect = 5e-29 Identities = 340/504 (67%), Gaps = 11/504 (2%) Strand=Plus/Minus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||| ||||| ||||| |||||||||||||| ||||| || | | || || | ||||| Sbjct 504 GTACTCCCCTACTCTCTTCTCAAAGAAGTTGGTCTTGCCTTGAAGAGAAATCATGTCCAT 445 Query 47902 GAAGAGGAAGGGGTTGGGTG--TGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGG 47959 || ||| |||||| || || || | | | ||| |||| | ||||| Sbjct 444 CCAGTCGAAAGGGTTGCTTGCCTGGTAGAGTTTAGGG-CAG-CCCAGAGCACCGAGCAGC 387 Query 47960 TGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGAC 48019 || |||||| |||| ||||| | |||| ||| ||||||||| ||||| Sbjct 386 CTGTCAGCGACGAACTCAATGTACTGGCACATCAGGTCAGAGTTCATGCCAATGAGCTCA 327 Query 48020 ACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGC 48079 || |||||||| | ||| ||||| || || || ||||| || | | ||| | Sbjct 326 ACAGGCAAAGCATCCTTGACGAACTCTTTTTCGATGGCGACGGCGTCTGCAATAATAGTC 267 Query 48080 TTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAG 48139 | || | | | | | |||||| || | ||| ||| | || ||||| ||| Sbjct 266 TGAATTCTGTCATTGGGCAGCTTGTTGACTAGCTTCTT---ATACATCAAACAGGCGAAG 210 Query 48140 TCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATG 48199 || | ||| | ||| || ||||||||||| ||| ||||||| |||||||| || |||||| Sbjct 209 TCACAGTGAAGGCCCTCATCCCGGCTGATAAGCTCGTTGGAAAAGCAGAGTCCTGGCATG 150 Query 48200 ACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAG-AGCCAGAGAAGAAGATGCCCTC 48258 | || | || ||||||||||| || | || |||| | |||||||| ||||||||||| Sbjct 149 AGACCACGCTTCTTGAGCCAGAAGATGGA-GCAAAAGGATCCAGAGAAAAAGATGCCCTC 91 Query 48259 CACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGA 48318 ||||| || || || ||||| || | ||| || || ||| | | ||| Sbjct 90 AACTGCAGCAAAGGCTACAAGCCTTTCAGCATAAGCGGCATTTTTGGCGTTGCACCATTG 31 Query 48319 AAGCGCCCAGTCT-GCCTTCTTCT 48341 ||| ||||| ||| |||||||||| Sbjct 30 AAGTGCCCA-TCTAGCCTTCTTCT 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 927900020030720