Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq19842 129 1e-24 seq8846 122 2e-22 >seq19842 Length=884 Score = 129 bits (142), Expect = 1e-24 Identities = 119/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 25880 GGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCT 25939 |||| |||||||||||||| || ||||||||||||||| || || ||| |||||| Sbjct 68 GGCTTGTAGCCTTTGCTGCAGTTGAGGGCATCTTTTTCTCTGGATCCTTTTGCTCCATCT 127 Query 25940 TCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCA 25999 ||||||||||| || || |||||| || || | ||||||||||||||| |||||| Sbjct 128 TCTGGCTCAAGAAGCGTGGTCTCATGCCAGGACTCTGCTTTTCCAACGAGCTTATCAGCC 187 Query 26000 GGGACGAGGGTCTCCACAGAGATTTTGCCTG 26030 |||| ||||| || ||| | || || ||||| Sbjct 188 GGGATGAGGGCCTTCACTGTGACTTCGCCTG 218 >seq8846 Length=717 Score = 122 bits (134), Expect = 2e-22 Identities = 330/493 (67%), Gaps = 13/493 (3%) Strand=Plus/Plus Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773 || ||||| ||||| || |||||||| | || |||| ||||||||||| || || Sbjct 148 GCAAGGTTGCACACAGCGACCTCGTCAGGGGCAGTGTACTCGATGATCTCTGTGCAAAGA 207 Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAG-CGTCCTT 221832 |||||| | |||||||||||||| | | |||||||| || || || |||| |||||| Sbjct 208 TTGCTGGATTTGATGGTCCCCAGATTCTGTTGATTAGATTTCCGGTT-GCAGTGGTCCTT 266 Query 221833 GTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTC 221892 ||| ||||| | || ||||||||| | ||| | | || ||| |||||| | Sbjct 267 GTACAGCATGTAAGGGGTGCCAGTCTCAATCTGGGAATCTAGGATCGCAAACCAGAGCT- 325 Query 221893 TCTG-GCGCTCACCGTCC-TCTTGACTGCACCCTCGGTCTTTTCATAC--CCGGTATAGA 221948 ||| || ||||| || ||||| || || || || | |||||| | || ||| Sbjct 326 GCTGAGCCTTCACCACCCTTCTTGCCT-TTCCTTC--TC-TCTCATACTTCTCATAAAGA 381 Query 221949 GCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCA 222008 || ||||||| || || || | || | ||| | ||| | || || | || Sbjct 382 GC--CTCAAACTCGTCTCCCCACACGTCAGGTAACCCTCGGCACTCGTTAGGGCAGAACA 439 Query 222009 GACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCT 222068 || ||| | ||| ||| || | | |||||||||||| || ||||||| || | Sbjct 440 GAGACCACTCGCCGTTCGCTTGTACGCGTTTCATGAAGAGGTCTGGAATCCACATAGCGT 499 Query 222069 GAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACT 222128 || | |||||||| || || || ||| | || || ||| |||||||||| Sbjct 500 AGAATAAATCTCTGGCGCGATGAAGTTCATTGCCATGATTCTTTTTCAAGTCCAAAAACT 559 Query 222129 CAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGC 222188 | || ||||| || ||||| ||||| || || | || | | ||| |||||| | Sbjct 560 CGAATATGTCGGCATGCCAAGGCTCAAGGTACATAGCAAATGAGCCCTTGCGCTTGCCTC 619 Query 222189 CACCCTGATCCAC 222201 |||||||||| || Sbjct 620 CACCCTGATCTAC 632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 925222502659520