Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq16061 107 1e-17 seq205478 100 2e-15 >seq16061 Length=1490 Score = 107 bits (118), Expect = 1e-17 Identities = 86/104 (83%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 476069 CTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAA 476128 || || || ||| | |||| ||| |||||||||||||| ||||| |||||||| ||||| Sbjct 881 CTCGGTACCTTTGACCTTGTAGGCATTCCTCCTGCTCCTAGAGGCGTTCCTCAGATTGAG 822 Query 476129 GTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGC 476172 ||| | || ||||||||||| |||||||| ||||||||| ||| Sbjct 821 GTTTCCTTCGATATTGATGCCAATGGTATAGTTAATGTTAGTGC 778 >seq205478 Length=785 Score = 100 bits (110), Expect = 2e-15 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| || ||||| || || || || || || || || | ||||| || | ||||| Sbjct 322 ACGGAGGCGGAGAACGAGGTGGAGAGTGCTCTCCTTCTGGATGTTATAGTCGGAGAGAGT 381 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||||||||| ||||| ||||| || || ||||| || || ||||||||||| || Sbjct 382 GCGGCCATCTTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGAATGCC 441 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACA 480698 |||||||| ||||||||||| || ||| Sbjct 442 CTCCTTGTCCTGAATCTTTTGCTTCACA 469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3254796735388484