Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq113011 125 8e-24 seq185833 91.5 2e-13 >seq113011 Length=806 Score = 125 bits (138), Expect = 8e-24 Identities = 276/407 (68%), Gaps = 24/407 (6%) Strand=Plus/Plus Query 138246 TTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCATTT 138305 || || || || ||||| |||||| || | || | | ||||| ||||| ||||| Sbjct 1 TTAAGGTGGCAGACATCAGCACCAATGTGTCCAGGACTGGTCAGACCCACCTGGGCATTC 60 Query 138306 AGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAAC--GATCTTACATATCT 138363 | ||| |||||||| | |||||| || ||||||| ||||| || |||| |||| || Sbjct 61 ATATTGGCACCATCCATATATACTTGGCCACCATGCTCATGGACAAGATCGCACATGTCC 120 Query 138364 GTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACATGAGA 138423 || | || ||||| ||||| | || || ||||| |||||||| |||| Sbjct 121 TTC--ACCTTCTCCTCAAAGACACCGTAGGTGGAGGGATACGTAATCAT-------GAGA 171 Query 138424 GTTCAAATGTATTCATGAT-TGCTTT-----CTTCTCT---AGATCTTTGATGTCTATGT 138474 | || |||| || | |||||| ||| ||| | ||| | ||| | || Sbjct 172 GCAGCAAG--ATTCTTGCTATGCTTTTCTGTCTTGTCTTTCAAATCAGCAAAGTCAACGT 229 Query 138475 TGCCATCATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCAG 138534 |||| || || ||| | || || |||| ||||||||||| ||||| || ||||| |||| Sbjct 230 TGCCCTCTTCGTCAGATTTTACCACTACGACTTTCATTCCAGCCATAACAGCACTGGCAG 289 Query 138535 GATTAGTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTATCAT-CTCCTGAT 138593 | |||||||| || || || |||| |||||||| || ||| | | | ||| || Sbjct 290 GGTTAGTTCCGTGAGCAGAGACTGGGATCAGACAGACGGTTCGGTGCCCTTCCTCTCGAG 349 Query 138594 CCTTGATGATATGCTTGGATTGCTAACAGTCCTGCATACTCACCCTG 138640 | | |||||| | |||| || | || || |||||||| ||||| Sbjct 350 AC-TCATGATAGGAGCGGATAGCCATCAAACCCGCATACTCCCCCTG 395 >seq185833 Length=1351 Score = 91.5 bits (100), Expect = 2e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 139882 CTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCCTGTAAGTTCTGTGATGAGCGTTT 139941 ||||||| |||| ||| ||||| || |||| || || || | || ||| | || | Sbjct 287 CTTCATCCAATAAAGAGGCGTTCGCCATTGCGAAGCCAGTCATATCGCAGATCATAGTCT 228 Query 139942 GGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATATCTCAGCTTGATAGGGAGTGTAAG 140001 | ||||| || |||| |||| ||| || || | | ||||||||||| || ||||| | Sbjct 227 GATAATTCAACAAAGACTCCAGTCTGCCTTGTGCCACTTCAGCTTGATATGGGGTGTAGG 168 Query 140002 ATGTGTACCAACTAGGATTCTCAAGAACGTTTCGCTGTATGAC 140044 |||||||||| ||||| ||||| || |||| ||| || || Sbjct 167 CGGTGTACCAACCCGGATTTTCAAGCACATTTCTCTGGATAAC 125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576740429277160