Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq73356 116 4e-21 seq19842 109 7e-19 >seq73356 Length=1326 Score = 116 bits (128), Expect = 4e-21 Identities = 199/286 (70%), Gaps = 2/286 (1%) Strand=Plus/Plus Query 75201 TCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACA 75260 || |||| | || ||| | ||| | ||| | || ||| | ||||||||| || |||| Sbjct 1016 TCGTGGAGAGGCCTCAGCATATGATTATGAGAGTGGCAGTAGGCATCCACAAGGGCGACA 1075 Query 75261 TTGATTCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACA 75319 |||| | || | |||| |||||| |||||| | | || | |||| ||| || || Sbjct 1076 TTGAAGCGGTGCTAAAGACGTACGACTTGATGTCGCGCAAGT-TCTTCACTCATGCGACT 1134 Query 75320 CCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCC 75379 || || ||||||||||| ||||| || |||||||| ||||| |||||||| | || Sbjct 1135 CCCACTCTCTTCAATGCCGGTACTCCGCGACCGCAGCTGTCCTCCTGCTTCCTGCTTACC 1194 Query 75380 AACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCA 75439 | ||| | ||||| || | || || |||| ||||| | | |||||||| || || Sbjct 1195 ATGAAGAATGACTCCATTGAGGGCATTTATGACACTCTCAAGCAGTGTGCGTGCATTTCT 1254 Query 75440 AAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCA 75485 |||| ||||| || || || | ||||||| | | |||||| Sbjct 1255 AAGTATGCTGGTGGCATAGGCGTCAGCATCCATAACATCCGAGCCA 1300 >seq19842 Length=884 Score = 109 bits (120), Expect = 7e-19 Identities = 332/507 (65%), Gaps = 22/507 (4%) Strand=Plus/Plus Query 65021 AGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACAC--AAAGTCTCGCTCCTTCGCCGA 65078 |||||||||| | ||||||| | |||||| || | ||| | |||| | || || Sbjct 8 AGAAGAAGGCTAGATGGGCACTTCAATGGTGCAACGCCAAAAATGCCGCTTAT--GCTGA 65 Query 65079 GCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTAT 65138 | ||| | || ||||| || ||||| ||||| ||||| || || || ||| | || Sbjct 66 AAGGCTTGTAGCCTTTGCTGCAGTTGAGGGCATCTTTTTCTCTGGATCCTTTTGCTCCAT 125 Query 65139 TTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTC 65198 | ||| | |||||||| |||||||||||||| || ||||| || || || ||||| Sbjct 126 CTTCTGGCTCAAGAAGCGTGGTCTCATGCCAGGACTCTGCTTTTCCAACGAGCTTATCAG 185 Query 65199 CCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTGCGTAATAG 65258 ||| |||||||| || ||| || || ||| | | | |||| || || | Sbjct 186 CCGGGATGAGGGCCTTCACTGTGACTTCGCCTGTTTGATGTATAAGA---AGC-TAGTCA 241 Query 65259 ACCCACTACC----GAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAAG 65314 || || || || | || || | || | ||| || || | || || |||| Sbjct 242 ACAAGCTGCCCAATGACAGAATTCAGACTATTATTGCAGACGCCGTCGCCATCGAAAAAG 301 Query 65315 GGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGTCCG 65374 |||| || ||| || | || | | ||||| || ||||||||||| ||||| | Sbjct 302 AGTTCGTCAAGGATGCTTTGCCTGTTGAGCTCATTGGCATGAACTCTGACCTGATGTGCC 361 Query 65375 AGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGT----TGGGGTGCCACCCA-T 65429 |||||||||||| || | || | || ||| || |||| |||| | | Sbjct 362 AGTACATTGAGTTCGTCGCTGACAGGCTGCTC-----GGTGCTCTGGGCTGCCCTAAACT 416 Query 65430 TTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAA 65489 | | || | || || || |||| ||||| | ||| ||| | || |||||||| Sbjct 417 CTACCAGGCAAGCAACCCTTTCGACTGGATGGACATGATTTCTCTTCAAGGCAAGACCAA 476 Query 65490 CTTCTTTGAGAAGCGAGTTGGGGACTA 65516 ||||||||||||| |||| ||||| || Sbjct 477 CTTCTTTGAGAAGAGAGTAGGGGAGTA 503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594243105331040