Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq182219 145 1e-29 seq205478 131 2e-25 >seq182219 Length=425 Score = 145 bits (160), Expect = 1e-29 Identities = 234/336 (70%), Gaps = 3/336 (1%) Strand=Plus/Plus Query 196226 ATGGAACCTGTTGAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAA 196285 ||||| |||||||| | || ||||| || || ||| | ||||| |||| |||| Sbjct 55 ATGGAGCCTGTTGAGAAGGTTCTTCGCGATGCCAAGCTCTCCAAGTCCCAGGTCCATGAG 114 Query 196286 ATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTC 196345 | |||||||| ||||| || |||||||| || ||| |||| ||| | || | |||| Sbjct 115 GTCGTCCTTGTCGGAGGCTCCACCCGTATCCCTAAGGTTCAGCAGCTTCTGACGGACTTC 174 Query 196346 TTCAATAATAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCG 196405 ||||| || || | ||| | |||||||| || || || ||||| ||||| || Sbjct 175 TTCAACGGCAAGGAGCCATGCAAGAGCATCAACCCAGACGAGGCTGTTGCCTATGGCGCT 234 Query 196406 GCCGTTCAGGCTGCTATTCTCTCAGGTGTTGACAATA---ATAACGTCCAAGATCTTCTG 196462 |||| ||||||||||| ||||| ||| |||| | | || | || ||||| || Sbjct 235 ACCGTCCAGGCTGCTATCCTCTCTGGTCACGACAGCAGCGAGAAGCTTCAGGATCTGCTT 294 Query 196463 CTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAA 196522 || || ||||| | || |||| || ||||| || || || || ||||| ||||| | Sbjct 295 CTGCTGGATGTCACTCCTCTATCTCTTGGTCTGGAGACTGCTGGCGGTGTGATGACCACG 354 Query 196523 ATTATTGATAGGAACACAACTATTCCGACTAAGAAG 196558 | || | || ||||| || || || || |||||| Sbjct 355 CTCATCAAGAGAAACACCACCATCCCTACCAAGAAG 390 >seq205478 Length=785 Score = 131 bits (144), Expect = 2e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 171889 GGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAG 171948 || || || ||||| ||||| || ||| | || ||||| ||||| || | || ||| Sbjct 516 GGCAAGACCATCACTCTCGATGTGGAGCCTTCGGACACCATCGAGAATGTGAAGCAAAAG 457 Query 171949 ATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAG 172008 ||||| || ||||| |||||||| || || ||||| || || || || ||||| || ||| Sbjct 456 ATTCAGGACAAGGAGGGCATTCCTCCTGACCAGCAGCGTCTCATCTTCGCTGGCAAGCAG 397 Query 172009 CTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTT 172068 ||||||||||| || || ||| | || || ||| | || |||||| ||||| ||||| Sbjct 396 CTTGAAGATGGCCGCACTCTCTCCGACTATAACATCCAGAAGGAGAGCACTCTCCACCTC 337 Query 172069 GTTCTAAGGCTTCGGGGTGG 172088 ||||| | || || ||||| Sbjct 336 GTTCTCCGCCTCCGTGGTGG 317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655296876435760