Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq19842 154 2e-31 seq60673 89.7 6e-12 seq55578 87.8 2e-11 >seq19842 Length=884 Score = 154 bits (170), Expect = 2e-31 Identities = 223/312 (71%), Gaps = 2/312 (1%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 |||||||||||||| || || | | ||| || |||||||||||||| | || || ||| Sbjct 512 GCCTTGGCGTACTCCCCTACTCTCTTCTCAAAGAAGTTGGTCTTGCCTTGAAGAGAAATC 453 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 | |||||||| ||| |||||| | || |||| | || ||| || || | || Sbjct 452 ATGTCCATCCAGTCGAAAGGGTTGCTTGCCTGGTAGAGTTTAGGGCAGCCCAGAGCACCG 393 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||| | ||| ||||| ||||| |||||||||||||| ||| | | ||||||||| ||| Sbjct 392 AGCAGCCTGTCAGCGACGAACTCAATGTACTGGCACATCAGGTCAGAGTTCATGCCAATG 333 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 ||| | || |||| | || | || |||||||| ||||| ||||||| || | || Sbjct 332 AGCTCAACAGGCAAAGCATCCTTGACGAACTCTTTTTCGATGGCGACGGCGTCTGCAATA 273 Query 868931 ATCTGCCTGGGCAC-GTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGGC 868989 || | ||| | ||| | |||||||||| ||| || | || | || ||||| Sbjct 272 AT-AGTCTGAATTCTGTCATTGGGCAGCTTGTTGACTAGCTTCTTATACATCAAACAGGC 214 Query 868990 AAAGTCGCAGTG 869001 ||||| ||||| Sbjct 213 GAAGTCACAGTG 202 Score = 100 bits (110), Expect = 3e-15 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || || || || ||||| | |||||| |||| ||| || |||||||| || |||||| Sbjct 197 CCCTCATCCCGGCTGATAAGCTCGTTGGAAAAGCAGAGTCCTGGCATGAGACCACGCTTC 138 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 |||||||| ||||||| ||| || || ||||||||||||||||| || || |||||| Sbjct 137 TTGAGCCAGAAGATGGAGCAAAAGGATCCAGAGAAAAAGATGCCCTCAACTGCAGCAAAG 78 Query 869300 CCGATGAGCCGCTCGGCA 869317 | | |||| || ||| Sbjct 77 GCTACAAGCCTTTCAGCA 60 >seq60673 Length=674 Score = 89.7 bits (98), Expect = 6e-12 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 19083 AACGTGCCGGCAGGCCTCGGCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCAC 19142 |||||||| | || || || ||||| ||||| |||||| | |||||| ||| || ||| Sbjct 464 AACGTGCCTCCTGGTCTGGGTGAGCCATGCTTCGACAAGCTGGAGGCCAAGCTGGCGCAC 405 Query 19143 GCCATGCTGTCGATCCCGGCCACCAAGGGATTCGAGATTGGC 19184 || ||||| || | || || ||||||||||||||||||||| Sbjct 404 GCAATGCTCTCCCTTCCCGCTACCAAGGGATTCGAGATTGGC 363 >seq55578 Length=191 Score = 87.8 bits (96), Expect = 2e-11 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 1254413 CTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGAC 1254472 |||||| || | ||||| ||||| ||||| | ||||| |||| |||||||||| Sbjct 6 CTTGTTGTAGCGAGCCAGGCGGCCAGCCTCAAGAGCAATGCGCTCGAAGATGTCGTTGAT 65 Query 1254473 AAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTT 1254532 || |||||||||| ||||| | ||| ||| || ||| ||||| |||||||| Sbjct 66 GAAAGAGTTCATGATAGACATAGCGCGCTTGCTGATACCAGTGTCAGGGTGGACCTGCTT 125 Query 1254533 GAGCACCTTGTAGATG 1254548 ||| |||||||||||| Sbjct 126 GAGGACCTTGTAGATG 141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6081536414003611