Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq19842 152 8e-31 seq107065 93.3 7e-13 seq91063 93.3 7e-13 seq55578 89.7 8e-12 seq73356 86.0 1e-10 >seq19842 Length=884 Score = 152 bits (168), Expect = 8e-31 Identities = 177/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 793893 ACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 793952 || || |||||||| ||||| || || | | ||| || |||||||||||||| | || Sbjct 518 ACACCTGCCTTGGCGTACTCCCCTACTCTCTTCTCAAAGAAGTTGGTCTTGCCTTGAAGA 459 Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGC 794012 || |||| |||||||| ||| |||||| | | ||||| | || ||| || || Sbjct 458 GAAATCATGTCCATCCAGTCGAAAGGGTTGCTTGCCTGGTAGAGTTTAGGGCAGCCCAGA 399 Query 794013 GACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATG 794072 | | ||||| | ||| |||||||| ||||||||||||||||| ||| | | ||||||| Sbjct 398 GCACCGAGCAGCCTGTCAGCGACGAACTCAATGTACTGGCACATCAGGTCAGAGTTCATG 339 Query 794073 CCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTC 794131 || |||||| | || |||| | || |||| |||||||| ||||| ||||||| || Sbjct 338 CCAATGAGCTCAACAGGCAAAGCATCCTTGACGAACTCTTTTTCGATGGCGACGGCGTC 280 Score = 113 bits (124), Expect = 7e-19 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || || || || ||||| | |||||| ||||||||| || |||||||| || |||||| Sbjct 197 CCCTCATCCCGGCTGATAAGCTCGTTGGAAAAGCAGAGTCCTGGCATGAGACCACGCTTC 138 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||| ||||||| || || || ||||||||||||||||| || || |||||| Sbjct 137 TTGAGCCAGAAGATGGAGCAAAAGGATCCAGAGAAAAAGATGCCCTCAACTGCAGCAAAG 78 Query 794461 CCGACGAGCCGCTCGGCAAAAG 794482 | || |||| || ||| ||| Sbjct 77 GCTACAAGCCTTTCAGCATAAG 56 >seq107065 Length=740 Score = 93.3 bits (102), Expect = 7e-13 Identities = 108/144 (75%), Gaps = 4/144 (3%) Strand=Plus/Minus Query 1485467 CGTTGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGC 1485526 || || ||||||| || |||||||||||||| ||||| |||||| |||| || || || Sbjct 147 CGGTGAACTTGGTCACAGCCTTGGTACCCTCAGAGACAGCGTGCTTGGCAAGCTCACCAG 88 Query 1485527 GCATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTG--CGCTTGTT 1485584 | | || ||||||||||||||||| | || | | | || |||||| |||||| Sbjct 87 GGAGCATGAGGCGCACGGCGGTCTGAACTTCTCTG--GAAGAGAGTGTTGACTTCTTGTT 30 Query 1485585 AGTGCGCGCCAGGCGGCCGGCCTC 1485608 ||| ||||||||||| ||||| Sbjct 29 GTAGCGAGCCAGGCGGCCAGCCTC 6 >seq91063 Length=155 Score = 93.3 bits (102), Expect = 7e-13 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 794548 GTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATG 794607 || || ||||| | ||| || |||||||| || || ||||| | |||||||||||| Sbjct 7 GTCTCAATGGCCCTAAAAGTGTTATCCTTCTCTACAGGATCCTTAATGTAGGTGTCGATC 66 Query 794608 AGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 | |||||||| ||| || ||||||||||| ||||| || |||||||| || ||||| Sbjct 67 AAAAGCGAGTACACCTCGGAATGGATGTTTTCAATGGCAATTTGGAAGCCGTAGAAGCA 125 >seq55578 Length=191 Score = 89.7 bits (98), Expect = 8e-12 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 1485579 CTTGTTAGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGAC 1485638 |||||| ||| ||||||||||| ||||| | ||||| |||| |||||||||| Sbjct 6 CTTGTTGTAGCGAGCCAGGCGGCCAGCCTCAAGAGCAATGCGCTCGAAGATGTCGTTGAT 65 Query 1485639 AAACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTT 1485698 || ||||||||||| ||||| | ||| ||| || ||| ||||| |||||||| Sbjct 66 GAAAGAGTTCATGATAGACATAGCGCGCTTGCTGATACCAGTGTCAGGGTGGACCTGCTT 125 Query 1485699 GAGCACCTTGTA 1485710 ||| |||||||| Sbjct 126 GAGGACCTTGTA 137 >seq73356 Length=1326 Score = 86.0 bits (94), Expect = 1e-10 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716 ||| ||||| || || ||| || ||| ||| |||| || || || || || ||||| Sbjct 1275 GCCTATGCCACCAGCATACTTAGAAATGCACGCACACTGCTTGAGAGTGTCATAAATGCC 1216 Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGT 2073776 ||| || ||||| ||||||| | ||| ||||| || || ||||| |||| || Sbjct 1215 CTCAATGGAGTCATTCTTCATGGTAAGCAGGAAGCAGGAGGACAGCTGCGGTCGCGGAGT 1156 Query 2073777 GCCGGCATTGAAGAGCGTGGGCGTCGC 2073803 |||||||||||||| ||||| ||||| Sbjct 1155 ACCGGCATTGAAGAGAGTGGGAGTCGC 1129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7883059345335537