Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq125140 105 5e-17 seq182219 91.5 1e-12 >seq125140 Length=2305 Score = 105 bits (116), Expect = 5e-17 Identities = 214/316 (68%), Gaps = 4/316 (1%) Strand=Plus/Minus Query 400259 ATAATGCTCACAAAGCAGGAACCAAAGAAGGATATAAATGTACCCTAATTTTGACAGAGG 400318 || |||| |||||||||||||| |||| | ||||| || || || | || || | Sbjct 2147 ATGATGCCAACAAAGCAGGAACCCGAGAATCCGAGAAATGCACTCTCATACTCACCGAAG 2088 Query 400319 GAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAATGTTATTGGAAGAGATTATTATG 400378 ||||||| || || || | || || || || || | | |||| ||||| || |||| Sbjct 2087 GAGATTCCGCGAAGACCATGGCCATCTCGGGTCTAACCGAAGTTGGTAGAGACTACTATG 2028 Query 400379 GAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGGGATGCTAGTCCTaaaaaaaTTG 400438 | || ||||| || | ||| |||| | |||| || | |||||| | | || || ||| Sbjct 2027 GTGTCTTCCCTCTGAAAGGCAAACCTCTGAACGTCAAGGATGCCACTATCAAGAAGATTA 1968 Query 400439 CCGATAATGAGGAAATTACAGCAATCaaaaaaaTTGTTGGACTTGAA--CAAGGAAAAGT 400496 | || ||||| || || | |||| || || |||| || ||| ||| || | Sbjct 1967 CTGACAATGATGAGATAGCTAACATCATGAAGATCATTGGCCTCGAAGTCAA--TAAGGA 1910 Query 400497 TTATGATGATCTCAAAGGTTTACGATATGGTAGTATTATGATTCTTGCTGATCAAGATGT 400556 || ||||||||| ||| ||||||| || | | || || ||||||||||| || Sbjct 1909 ATACAATGATCTCAGCCCTTTGAGATATGGCCGTCTGGTCATCCTGGCTGATCAAGACGT 1850 Query 400557 TGATGGGTACCATATC 400572 ||||| | |||||| Sbjct 1849 AGATGGATCTCATATC 1834 >seq182219 Length=425 Score = 91.5 bits (100), Expect = 1e-12 Identities = 195/287 (68%), Gaps = 7/287 (2%) Strand=Plus/Minus Query 281632 AGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACC 281691 ||| || || |||||||| | || | ||||||| | ||| ||||| || || | ||| Sbjct 381 AGGGATGGTGGTGTTTCTCTTGATGAGCGTGGTCATCACACCGCCAGCAGTCTCCAGACC 322 Query 281692 AAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTT--CATCAGT-TTG 281748 |||||| |||||||||||||| | || | | || ||||| || | | | || || Sbjct 321 AAGAGATAGAGGAGTGACATCCAGCAGAAGCAGATCCTGAAGCTTCTCGCTGCTGTCGTG 262 Query 281749 ACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAA- 281807 |||| || ||||| || || | | ||| ||||| |||||||| || || || || | Sbjct 261 ACCAGAGAGGATAGCAGCCTGGACGGTAGCGCCATAGGCAACAGCCTCGTCTGGGTTGAT 202 Query 281808 -CAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGA 281866 | || || | | | || || ||||| || | | ||||| || |||||||| Sbjct 201 GCTCTTGCA--TGGCTCCTTGCCGTTGAAGAAGTCCGTCAGAAGCTGCTGAACCTTAGGG 144 Query 281867 ATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTT 281913 ||||| | || ||||| || | || | ||||| ||||| || || Sbjct 143 ATACGGGTGGAGCCTCCGACAAGGACGACCTCATGGACCTGGGACTT 97 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3725313353140158