Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq183007 91.5 2e-13 seq127296 91.5 2e-13 seq200015 89.7 7e-13 >seq183007 Length=852 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||||||||| |||| ||||| | |||| |||| |||||| |||| Sbjct 414 TCCTCGTTAGTATAGTGGTTAGTATACCCGCCTGTCACGCGGGTGACCCGGGTTCAATTC 355 Query 8718 CCCGACGAGGAGC 8730 || |||| ||||| Sbjct 354 CCGGACGGGGAGC 342 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||||||||| |||| ||||| | |||| |||| |||||| ||| Sbjct 584 TTCCTCGTTAGTATAGTGGTTAGTATACCCGCCTGTCACGCGGGTGACCCGGGTTCAATT 525 Query 8717 CCCCGACGAGGAG 8729 ||| |||| |||| Sbjct 524 CCCGGACGGGGAG 512 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 11728 AGTCCTCGTTAGTATAGTGG-TAGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786 |||||||||||||||||||| |||||| |||| ||||| | |||| |||| |||||| || Sbjct 416 AGTCCTCGTTAGTATAGTGGTTAGTATACCCGCCTGTCACGCGGGTGACCCGGGTTCAAT 357 Query 11787 TCCCCGACGAGGAG 11800 |||| |||| |||| Sbjct 356 TCCCGGACGGGGAG 343 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGG-TAGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||||||||||||||| |||||| |||| ||||| | |||| |||| |||||| |||| Sbjct 583 TCCTCGTTAGTATAGTGGTTAGTATACCCGCCTGTCACGCGGGTGACCCGGGTTCAATTC 524 Query 11789 CCCGACGAGGAG 11800 || |||| |||| Sbjct 523 CCGGACGGGGAG 512 >seq127296 Length=332 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||||||||| |||| ||||| | |||| |||| |||||| |||| Sbjct 240 TCCTCGTTAGTATAGTGGTTAGTATACCCGCCTGTCACGCGGGTGACCCGGGTTCAATTC 181 Query 8718 CCCGACGAGGAGC 8730 || |||| ||||| Sbjct 180 CCGGACGGGGAGC 168 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11729 GTCCTCGTTAGTATAGTGG-TAGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 ||||||||||||||||||| |||||| |||| ||||| | |||| |||| |||||| ||| Sbjct 241 GTCCTCGTTAGTATAGTGGTTAGTATACCCGCCTGTCACGCGGGTGACCCGGGTTCAATT 182 Query 11788 CCCCGACGAGGAG 11800 ||| |||| |||| Sbjct 181 CCCGGACGGGGAG 169 >seq200015 Length=1098 Score = 89.7 bits (98), Expect = 7e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||||||||| |||| ||||| | |||| |||| |||||| |||| Sbjct 311 TCCTCGTTAGTATAGTGGTTAGTATACCCGCCTGTCACGCGGGTGACCCGGGTTCAATTC 370 Query 8718 CCCGACGAGGAG 8729 || |||| |||| Sbjct 371 CCGGACGGGGAG 382 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGG-TAGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||||||||||||||| |||||| |||| ||||| | |||| |||| |||||| |||| Sbjct 311 TCCTCGTTAGTATAGTGGTTAGTATACCCGCCTGTCACGCGGGTGACCCGGGTTCAATTC 370 Query 11789 CCCGACGAGGAG 11800 || |||| |||| Sbjct 371 CCGGACGGGGAG 382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 650298844009520