Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq73356 122 8e-23 seq8846 107 2e-18 seq205478 105 6e-18 seq3181 96.9 3e-15 seq27863 95.1 1e-14 seq19842 89.7 5e-13 seq101501 82.4 7e-11 >seq73356 Length=1326 Score = 122 bits (134), Expect = 8e-23 Identities = 257/382 (67%), Gaps = 6/382 (2%) Strand=Plus/Minus Query 149397 GCTCGCACTTTGTGCACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAG 149456 ||||| | || || | | ||||||| ||||| || | ||||| || ||| ||| || Sbjct 1298 GCTCGGATGTTATGGATGCTGACGCCTATGCCACCAGCATACTTAGAAATGCACGCACAC 1239 Query 149457 TCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCAC 149516 | ||| || || |||||||| ||| ||| ||||||||| ||||| ||||| Sbjct 1238 TGCTTGAGAGTGTCATAAATGCCCTCAATGGAGTCATTCTTCATGGTAAGCAGGAAGCAG 1179 Query 149517 GAGCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAA 149576 ||| ||| ||||| | || ||||| ||| | ||||| | || || || || Sbjct 1178 GAGGACAGCTGCGGTCGCGGAGTACCGGCATTGAAGAGAGTGGGAGTCGCATGAGTGAAG 1119 Query 149577 TATTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATG 149636 | || | ||||| ||||||| || ||||| || ||||| | |||||| Sbjct 1118 AACTTGCGCGACATCAAGTCGTACGTCTTTAGCACCGCTTCAATGTCGCCCTTGTGGATG 1059 Query 149637 CCTATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTG 149696 |||| || || | ||| | ||||||||| || | |||| | ||||| |||| | || Sbjct 1058 CCTACTGCCACTCTCATAATCATATGCTGAGGCCTCTCCACGACTTT---TCCATTAATG 1002 Query 149697 AGCAAG---TAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGG 149753 ||| | ||| | || || |||||| |||| ||||| | |||||||||||| || Sbjct 1001 CGCATGAGATAGGAGCGCTCGAGAGTCTTGAAGCCGAAGTAGTCGTAGTCAAAGTCACGA 942 Query 149754 CCGTGGTCAATGGCGGCGTCGA 149775 ||||| ||| |||| || || Sbjct 941 TCGTGGATAATCGCGGAGTTGA 920 >seq8846 Length=717 Score = 107 bits (118), Expect = 2e-18 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 148823 GATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGC 148882 |||||| || || |||||||| || ||| || ||||| ||||||| | |||||| | Sbjct 141 GATAGAAGCAAGGTTGCACACAGCGACCTCGTCAGGGGCAGTGTACTCGATGATCTCTGT 200 Query 148883 GCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGC 148942 ||| ||||||||| ||||||| |||| |||| |||||| || | |||||| Sbjct 201 GCAAAGATTGCTGGATTTGATGGTCCCCAGATTCTGTTGATTAGATTTCCGGTTGCAGTG 260 Query 148943 GTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTG 148981 |||||||||||||||||| || |||||| || | ||| Sbjct 261 GTCCTTGTACAGCATGTAAGGGGTGCCAGTCTCAATCTG 299 >seq205478 Length=785 Score = 105 bits (116), Expect = 6e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || ||||||||||| ||| | ||||| ||||||||||| ||||| ||||| |||||| Sbjct 389 TCTTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTG 448 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||||||||||| | | ||| | ||||| | |||||||| |||| |||| | Sbjct 449 TCCTGAATCTTTTGCTTCACATTCTCGATGGTGTCCGAAGGCTCCACATCGAGAGTGATG 508 Query 133626 GTTTTGCC 133633 || ||||| Sbjct 509 GTCTTGCC 516 >seq3181 Length=966 Score = 96.9 bits (106), Expect = 3e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 133531 TGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCT 133590 |||| ||||||||||| ||||| ||||| |||||||| |||||||||||| | | || Sbjct 966 TGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTTTGCTTCACATTCT 907 Query 133591 CAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 | | ||||| | ||||||||| |||| ||||| ||| ||||| Sbjct 906 CGATGGTGTCCGAGGGCTCCACATCGAGGGTGATGGTCTTGCC 864 >seq27863 Length=140 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| ||||||||||| ||| | || || ||||||||||| |||||||| || |||||| Sbjct 28 TCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATACCCTCCTTG 87 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGA 133617 || |||||| ||||| | | ||||| ||||| | ||||| || |||| Sbjct 88 TCCTGGATCTTCTGCTTTACATTCTCAATGGTGTCCGAAGGCTCAACATCGA 139 >seq19842 Length=884 Score = 89.7 bits (98), Expect = 5e-13 Identities = 281/435 (65%), Gaps = 3/435 (1%) Strand=Plus/Minus Query 120354 GTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCAT 120413 |||||| || || | |||||||| ||||| || ||||| | | ||||| ||| ||| Sbjct 504 GTACTCCCCTACTCTCTTCTCAAAGAAGTTGGTCTTGCCTTGAAGAGAAATCATGTCCAT 445 Query 120414 AAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAGTCG 120473 | ||||| |||||||| || | || ||| || ||||| ||||||| | Sbjct 444 CCAGTCGAAAGGGTTGCTTGCCTGGTAGAGTTTAGGGCAGCCCAGAGCACCGAGCAGCCT 385 Query 120474 GTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGCCAC 120533 ||| || || ||||||||||||| |||||| | | ||||||||| | | | | || Sbjct 384 GTCAGCGACGAACTCAATGTACTGGCACATCAGGTCAGAGTTCATGCCAATGAGCTCAAC 325 Query 120534 CGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGCGAG 120593 ||||| || | ||| ||||| || || ||| | || || || | || | | Sbjct 324 AGGCAAAGCATCCTTGACGAACTCTTTTTCGATGGCGACGGCGTCTGCAATAATAGTCTG 265 Query 120594 CATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACGCAAAGTC 120653 || ||| ||||| |||| | || || | || || || || ||||| Sbjct 264 AATTCTGTCATTGGGCAGCTTG---TTGACTAGCTTCTTATACATCAAACAGGCGAAGTC 208 Query 120654 CGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCATGAT 120713 ||| |||||||| || || || ||||||||| ||| || || ||||||| Sbjct 207 ACAGTGAAGGCCCTCATCCCGGCTGATAAGCTCGTTGGAAAAGCAGAGTCCTGGCATGAG 148 Query 120714 GCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCTCCAC 120773 || | |||||| |||| |||| | |||| || || || || | |||||| || Sbjct 147 ACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGATCCAGAGAAAAAGATGCCCTCAAC 88 Query 120774 GATGGCAAAGGCGAC 120788 |||||||| || Sbjct 87 TGCAGCAAAGGCTAC 73 >seq101501 Length=122 Score = 82.4 bits (90), Expect = 7e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 133531 TGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCT 133590 |||| ||||||||||| ||||| ||||| |||||||| ||||||||||| | | || Sbjct 122 TGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTTTGCTTCACATTCT 63 Query 133591 CAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 | | ||||| | |||||||| |||| |||| ||| ||||| Sbjct 62 CGATGGTGTCCGAAGGCTCCACATCGAGAGTGATGGTCTTGCC 20 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481535561606920