Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq8846 179 9e-40 >seq8846 Length=717 Score = 179 bits (198), Expect = 9e-40 Identities = 329/478 (69%), Gaps = 13/478 (3%) Strand=Plus/Minus Query 110686 TTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGT---A 110742 |||| || ||| | || ||||||||||| ||||| | ||| || |||| ||||| | Sbjct 673 TTGTCCCTATGCTGAGGGTCTTCAACGATACTGCTAGATACGTAGATCAGGGTGGAGGCA 614 Query 110743 AGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCT 110802 || | || |||||||||||||| || || || ||||||||| | || ||||| || || | Sbjct 613 AGCGCAAGGGCTCATTTGCTATGTACCTTGAGCCTTGGCATGCCGACATATTCGAGTTTT 554 Query 110803 TAGAACTTCGTAAA-AATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCA 110861 | || ||| ||| ||||| || |||| || | || | |||||||| || || Sbjct 553 TGGA-CTTGAAAAAGAATCATGGCAATGAACTTCATCGCGCCAGAGATTTATTCTACGCT 495 Query 110862 ATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATG 110921 ||||||||| |||| | ||||||||||| || |||| || ||| ||||||||| | Sbjct 494 ATGTGGATTCCAGACCTCTTCATGAAACGCGTACAAGCGAACGGCGAGTGGTCTCTGTTC 435 Query 110922 TGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTAC 110981 || ||| | | | || || |||| || | ||| | |||||||| | ||||| Sbjct 434 TGCCCTAACGAGTGCCGAGGGTTACCTGACGTGTGGGGAGACGAGTTTGAGGCTCTTTAT 375 Query 110982 GAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACA----AATTCCAGCTCAAGAACTTTG 111037 || || ||||| | |||||| ||| |||| | | ||||| | || || Sbjct 374 GAGAAGTATGAGAGAGAAGGAAAG----GCAAGAAGGGTGGTGAAGGCTCAGCAGCTCTG 319 Query 111038 GTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCA 111097 ||| ||||| || || || |||| ||||| || ||||| || |||| || || || Sbjct 318 GTTTGCGATCCTAGATTCCCAGATTGAGACTGGCACCCCTTACATGCTGTACAAGGACCA 259 Query 111098 TATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGC 111155 || || |||||||||||| |||| | || || || || || || ||| | ||| Sbjct 258 CTGCAACCGGAAATCTAATCAACAGAATCTGGGGACCATCAAATCCAGCAATCTTTGC 201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1182068774334663