Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq19842 152 7e-31 seq73356 116 5e-20 seq91063 111 2e-18 >seq19842 Length=884 Score = 152 bits (168), Expect = 7e-31 Identities = 229/320 (72%), Gaps = 4/320 (1%) Strand=Plus/Plus Query 1456454 CACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGACCGACGTG 1456513 ||||||||||| |||||| || | || | || ||| |||||||||| | | | ||| Sbjct 202 CACTGTGACTTCGCCTGTTTGATGTATAAGAAGCTAGTCAACAAGCTGCCCAATGACAGA 261 Query 1456514 CCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTG 1456573 || || || | || ||||||| ||||| |||||||| |||| || | || Sbjct 262 ATTCAGACTATTATTGCAGACGCCGTCGCCATCGAAAAAGAGTTCGTCAAGGATGCTTTG 321 Query 1456574 CCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCG 1456633 || || | |||||| ||||||||| | | || |||||||||||||||| | || |||| Sbjct 322 CCTGTTGAGCTCATTGGCATGAACTCTGAC-CTGATGTGCCAGTACATTG-AGTTCGTCG 379 Query 1456634 CCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTC 1456693 | ||| | ||||||| || || |||||| || | ||||| | | |||||| ||| Sbjct 380 CTGACAGGCTGCTCGGTGCTCTGGGCTGC-CCTAAACTCTACCAGGCAAGCAACCCTTTC 438 Query 1456694 CCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGC 1456752 |||||||| |||| || || | |||||||||||||| || ||| | || || Sbjct 439 GACTGGATGGACATGATTTCTCTTCAAGGCAAGACCAACTTCTTTGAGAAGAGAGTAGGG 498 Query 1456753 GAGTACGCCAAGGCCGGCGT 1456772 |||||||||||||| || || Sbjct 499 GAGTACGCCAAGGCAGGTGT 518 Score = 107 bits (118), Expect = 3e-17 Identities = 107/136 (79%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 1456175 TGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTG 1456233 ||| || |||| || | |||||| || || ||||||||||||||||| || || || Sbjct 60 TGCTGAAAGGCTTGTAGCCTTTGCTGCAGTTGAGGGCATCTTTTTCTCTGGATCCTTTTG 119 Query 1456234 CGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAAT 1456293 | ||||||| |||||||||||||| || |||||||| || | |||||||| |||||| Sbjct 120 CTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCAGGAC-TCTGCTTTTCCAACGAGC 178 Query 1456294 TTATCAGTCGCGACGA 1456309 ||||||| || || || Sbjct 179 TTATCAGCCGGGATGA 194 >seq73356 Length=1326 Score = 116 bits (128), Expect = 5e-20 Identities = 130/171 (76%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 259895 ATGTCGCAGCAGTTGTTCACCTCA-GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCG 259953 ||||||| |||| ||||| ||| ||||| ||||| ||||| |||||||| || ||||| Sbjct 1105 ATGTCGCGCAAGTTCTTCAC-TCATGCGACTCCCACTCTCTTCAATGCCGGTACTCCGCG 1163 Query 259954 CCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTA 260013 |||||| || || ||||| ||| | ||||||| || || || |||||||| || Sbjct 1164 ACCGCAGCTGTCCTCCTGCTTCCTGCTTACCATGAAGAATGACTCCATTGAGGGCATTTA 1223 Query 260014 TGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGG 260064 |||||| ||||||||||| ||| ||| || ||| || || ||||| || Sbjct 1224 TGACACTCTCAAGCAGTGTGCGTGCATTTCTAAGTATGCTGGTGGCATAGG 1274 >seq91063 Length=155 Score = 111 bits (122), Expect = 2e-18 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 1455961 aaaGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAAC 1456020 || ||||| ||| |||||||||| || | || ||||| ||||| || ||||| |||||| Sbjct 152 AATGAGGTTCAAGTGCCAGAGGCGCGGTGCTTCTACGGCTTCCAAATTGCCATTGAAAAC 93 Query 1456021 ATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAG 1456080 ||||| || || |||||||| |||||||||||||| | ||||| || || |||||| Sbjct 92 ATCCATTCCGAGGTGTACTCGCTTTTGATCGACACCTACATTAAGGATCCTGTAGAGAAG 33 Query 1456081 GACCACCTCTTTCGCGCCATCGACAC 1456106 || || ||| | ||||| || || Sbjct 32 GATAACACTTTTAGGGCCATTGAGAC 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7147719866225246