Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq19842 172 8e-38 seq8846 145 1e-29 >seq19842 Length=884 Score = 172 bits (190), Expect = 8e-38 Identities = 221/297 (74%), Gaps = 6/297 (2%) Strand=Plus/Minus Query 39478 CATCATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTT 39537 ||||| ||| | ||||| || ||||| | ||| || | ||| ||| | | |||||||| Sbjct 357 CATCAGGTCAGAGTTCATGCCAATGAGCTCAACAGGCAAAGCATCCTTGACGAACTCTTT 298 Query 39538 TTCGATGTCTACGGCCTCTGTTATTATCGATGTTACTACC-TCATCACTCGG-TGGATGC 39595 ||||||| | ||||| |||| || || | | | | | | |||| | | | | || Sbjct 297 TTCGATGGCGACGGCGTCTGCAATAATAG-TCTGAATTCTGTCATTGGGCAGCTTGTTG- 240 Query 39596 AATAAATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATT 39655 | || | ||| |||| || |||||||||||||| || ||||||||||| | || || Sbjct 239 ACTAGCTTCTTATACATCAAACAGGCGAAGTCACAGTGAAGGCCCTCATCCCGGCTGATA 180 Query 39656 AATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCA 39715 | ||||| ||||| |||||| ||||| ||||||||||| |||||||| || |||| | Sbjct 179 AGCTCGTTGGAAAAGCAGAGTCCTGGCATGAGACCACGCTTCTTGAGCCAGAAGATGG-A 121 Query 39716 GCAAAA-GATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTC 39771 |||||| |||||||| || |||||||| || ||||| ||||| || ||||| || || Sbjct 120 GCAAAAGGATCCAGAGAAAAAGATGCCCTCAACTGCAGCAAAGGCTACAAGCCTTTC 64 >seq8846 Length=717 Score = 145 bits (160), Expect = 1e-29 Identities = 346/515 (67%), Gaps = 10/515 (2%) Strand=Plus/Plus Query 69322 ATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTT 69381 || |||||||| || ||||| || ||||||| ||||||||||| || |||||| || Sbjct 190 ATGATCTCTGTGCAAAGATTGCTGGATTTGATGGTCCCCAGATTCTGTTGATTAGATTTC 249 Query 69382 TTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATA 69441 ||| ||| ||||||||| || || | || || ||||| |||||||| || || | Sbjct 250 CGGTTGCAGTGGTCCTTGTACAGCATGTAAGGGGTGCCAGTCTCAATCTGGGAATCTAGG 309 Query 69442 ATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTTC--TCTTTTTCAT 69499 || | ||| | | ||| || | || ||| | | ||| ||| | |||| Sbjct 310 ATCGCAAACCAGAGCTGCTGAGCCTTCACCAC--CCTTCTTGCCTTTCCTTCTCTCTCAT 367 Query 69500 A-TTGT-GTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTC 69557 | || | || | |||| || || || |||||||| || ||| || || | || || Sbjct 368 ACTTCTCATAAAGAGCC--TCAAACTCGTCTCCCCACACGTCAGGTAACCCTCGGCACTC 425 Query 69558 ATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGG 69617 || || || | || |||||| | | | | | || |||||||| || || || || Sbjct 426 GTTAGGGCAGAACAGAGACCACTCGCCGTTCGCTTGTACGCGTTTCATGAAGAGGTCTGG 485 Query 69618 AATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAtttttttt 69677 |||||| | ||| || | |||||||| | || |||||| || ||| ||||| Sbjct 486 AATCCACATAGCGTAGAATAAATCTCTGGCGCGATGAAGTTCATTGCCATGATTCTTTTT 545 Query 69678 AAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC-CATGACTC 69736 | || | |||||| | || || | |||||| || || || || || || |||| | Sbjct 546 CAAGTCCAAAAACTCGAATATGTCGGCATGCCAAGGCTCAAGGTACATAGCAAATGA-GC 604 Query 69737 CCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCA 69796 || || || ||| |||||||||| |||||| ||||| | || |||| ||||||| Sbjct 605 CCTTGCGCTTGCCTCCACCCTGATCTACGTATCTAGCAGTATCGTTGAAGACCCTCAGCA 664 Query 69797 TCGGAATAATACCATTAGATTTACCATTTGTTCCA 69831 | || | ||| |||||||| | || || || ||| Sbjct 665 TAGGGACAATGCCATTAGAGGTTCCGTTGGTGCCA 699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 684230001648120