Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq73356 116 5e-21 seq19842 109 7e-19 >seq73356 Length=1326 Score = 116 bits (128), Expect = 5e-21 Identities = 199/286 (70%), Gaps = 2/286 (1%) Strand=Plus/Minus Query 111810 TGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCAC 111869 |||||| | | ||||||| | || || || ||||| |||| || || ||||| Sbjct 1300 TGGCTCGGATGTTATGGATGCTGACGCCTATGCCACCAGCATACTTAGAAATGCACGCAC 1241 Query 111870 ACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGC 111929 ||| | | ||||| |||| || || | || ||||| | ||| ||| | ||||||| Sbjct 1240 ACTGCTTGAGAGTGTCATAAATGCCCTCAATGGAGTCATTCTTCATGGTAAGCAGGAAGC 1181 Query 111930 AACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGA 111989 | ||||| |||||||| || ||||| ||||||||||| || || || || ||| ||| Sbjct 1180 AGGAGGACAGCTGCGGTCGCGGAGTACCGGCATTGAAGAGAGTGGGAGTCGCATGAGTGA 1121 Query 111990 ACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGG 112048 | | || | | |||||| |||||| |||| | || | |||||||| || |||| Sbjct 1120 AGA-ACTTGCGCGACATCAAGTCGTACGTCTTTAGCACCGCTTCAATGTCGCCCTTGTGG 1062 Query 112049 ATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGA 112094 ||||| | ||| || | ||| | ||| | ||| || | |||| || Sbjct 1061 ATGCCTACTGCCACTCTCATAATCATATGCTGAGGCCTCTCCACGA 1016 >seq19842 Length=884 Score = 109 bits (120), Expect = 7e-19 Identities = 332/507 (65%), Gaps = 22/507 (4%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || ||||| || | ||||||||||||||||||||| || | ||| ||| | ||||| Sbjct 503 TACTCCCCTACTCTCTTCTCAAAGAAGTTGGTCTTGCCTTGAAGAGAAATCATGTCCATC 444 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA-TGGGTGGCACCCCA----ACTTGTTTGAGGA 122485 |||| || || || | || | | | | |||| |||| || ||| | Sbjct 443 CAGTCGAAAGGGTTGCTTGCCTGGTAGAGTTTAGGGCAGCCCAGAGCACC-----GAGCA 389 Query 122486 GACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGT 122545 | | || | || |||||||||||| | ||||| ||||||||||| || ||||| | Sbjct 388 GCCTGTCAGCGACGAACTCAATGTACTGGCACATCAGGTCAGAGTTCATGCCAATGAGCT 329 Query 122546 TACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGG 122605 | || | || ||| || |||| |||| || || | || || ||| | || | Sbjct 328 CAACAGGCAAAGCATCCTTGACGAACTCTTTTTCGATGGCGACGGCGTCTGCAATAATAG 269 Query 122606 CGTGGATAGTTTC----GGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCA 122661 || || | || || || || | || || |||| | | | ||| Sbjct 268 TCTGAATTCTGTCATTGGGCAGCTTGTTGACTA-GCT---TCTTATACATCAAACAGGCG 213 Query 122662 AACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGC 122721 || || ||| || |||||||| ||| ||||| || || || ||||| || |||||| Sbjct 212 AAGTCACAGTGAAGGCCCTCATCCCGGCTGATAAGCTCGTTGGAAAAGCAGAGTCCTGGC 153 Query 122722 ATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCC 122781 |||||||| |||||||| | ||| | || | ||| || || || ||||| ||||| ||| Sbjct 152 ATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGATCCAGAGAAAAAGATGCCC 93 Query 122782 TCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTT--GCATCAAACC 122839 || || ||||| || | ||| | ||| || | |||| | ||| || | ||| Sbjct 92 TCAACTGCAGCAAAGGCTACAAGCCTTTCAGC--ATAAGCGGCATTTTTGGCGTTGCACC 35 Query 122840 ATTTCATTGCCCATTTCGCCTTCTTCT 122866 ||| | ||||||| | |||||||||| Sbjct 34 ATTGAAGTGCCCATCTAGCCTTCTTCT 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 625582808656800