Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq8846 120 4e-22 seq19842 98.7 1e-15 >seq8846 Length=717 Score = 120 bits (132), Expect = 4e-22 Identities = 434/672 (65%), Gaps = 14/672 (2%) Strand=Plus/Plus Query 118586 GGTCTCCACG---GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAAC 118642 || ||||||| || ||| | || | ||||| ||| | || || || | || || || Sbjct 12 GGCCTCCACGACAGGGTAATAGTTGATGTCGATGACCTTGTTAAGGTTCCTTGTCACTAC 71 Query 118643 CTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTT 118702 ||| | ||| || | || || || |||| | | || || || | || ||| | Sbjct 72 CTTGGAGATCTCCTTGAGGTTATCAAAATCGTAGGTCCGTGTATCGTTGTTTACAAAGGA 131 Query 118703 AGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTAT 118762 | ||| ||| || || || || ||||||| | ||| || |||||||||| || Sbjct 132 CGCGAGGTTGATAGAAGCAAGGTTGCACACAGCGACCTCGTCAGGGGCAGTGTACTCGAT 191 Query 118763 AATTTCCGTGCACAAGTTTGAACTC---TTAATGGTGCCCAAGTTCTTTTGATTTGACTT 118819 || || ||||| ||| ||| || || ||||| |||| |||| |||||| || || Sbjct 192 GATCTCTGTGCA-AAGATTG--CTGGATTTGATGGTCCCCAGATTCTGTTGATTAGATTT 248 Query 118820 TGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAG 118879 ||| || |||||||| |||||||| || || || ||||| | ||||| | || Sbjct 249 CCGGTTGCAGTGGTCCTTGTACAGCATGTAAGGGGTGCCAGTCTCAATCTGGGAATCTAG 308 Query 118880 AATAGCCTTCCAGACATCGGCAGCTGGCAC-AGTGGCGTTGGCTCGCCCCTCTTCCTCGT 118938 || || ||||| | ||| ||| | ||| || || ||| ||| | Sbjct 309 GATCGCAAACCAGAGCTGCTGAGCCTTCACCACCCTTCTTGCCTTTCCT-TCTCTCTCAT 367 Query 118939 ACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTAT 118998 |||| || || || |||||||| || ||| | || | | |||| | || | Sbjct 368 ACTTCTCATAAAGAGCCTCAAACTCGTCTCCCCACACGTCAGGTAACCCTCGGCACTCGT 427 Query 118999 CTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGA 119058 |||||||| |||||||| | || | | | || || ||||||||||||||||| | Sbjct 428 TAGGGCAGAACAGAGACCACTCGCCGTTCGCTTGTACGCGTTTCATGAAGAGGTCTGGAA 487 Query 119059 TCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCA 119118 |||| | || |||| | ||| | |||| ||||| || ||||| || Sbjct 488 TCCACATAGCGTAGAATAAATCTCTGGCGCGATGAAGTTCATTGCCATGATTCTTTTTCA 547 Query 119119 ACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCT 119178 | |||||||| || | || || || ||||| || || ||||||| || | ||| |||| Sbjct 548 AGTCCAAAAACTCGAATATGTCGGCATGCCAAGGCTCAAGGTACATAGCAAATGAGCCCT 607 Query 119179 TACG---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTG 119235 | || | ||| |||| | ||| || || ||||| |||| || || | ||||| | Sbjct 608 TGCGCTTGCCTCCACCCTGATCTACGTATCTAGCAGTATCGTTGAAGACCCTCAGCATAG 667 Query 119236 GAATGATACCAT 119247 | | || |||| Sbjct 668 GGACAATGCCAT 679 >seq19842 Length=884 Score = 98.7 bits (108), Expect = 1e-15 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| || ||||| || ||| ||| || || || || ||||| || |||||||||||||| Sbjct 204 GTGAAGGCCCTCATCCCGGCTGATAAGCTCGTTGGAAAAGCAGAGTCCTGGCATGAGACC 145 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 |||||||| | |||||| || | ||||| || |||||||| ||||| ||||| || Sbjct 144 ACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGATCCAGAGAAAAAGATGCCCTCAAC 88 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 616023434137480