Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq19842 127 2e-24 seq125140 102 9e-17 seq73356 93.3 5e-14 >seq19842 Length=884 Score = 127 bits (140), Expect = 2e-24 Identities = 115/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 94800 TGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTG 94859 |||||| | || | || ||||| |||||||| ||||| |||||||| ||||| || Sbjct 60 TGCTGAAAGGCTTGTAGCCTTTGCTGCAGTTGAGGGCATCTTTTTCTCTGGATCCTTTTG 119 Query 94860 CGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCT 94919 | | || | |||||||||||||| |||||||||||||| |||||||| ||||||||||| Sbjct 120 CTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCAGGACTCTGCTTTTCCAACGAGCT 179 Query 94920 TATCTCTCGTGACGAGGGACTCCAC 94944 |||| || || ||||| || ||| Sbjct 180 TATCAGCCGGGATGAGGGCCTTCAC 204 >seq125140 Length=2305 Score = 102 bits (112), Expect = 9e-17 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 169358 AGAGGGAAGACACCGTAGTGATCACGACCAACGACGGAGAGACCCGCGACTGCGAGAGTC 169417 |||||||||||||| |||| || | |||||| ||| ||||||| || || | ||| Sbjct 2015 AGAGGGAAGACACCATAGTAGTCTCTACCAACTTCGGTTAGACCCGAGATGGCCATGGTC 2074 Query 169418 TTCGCCGAGTCACCCTCGGTGACGATGAGCGTACATTTTCCAGATTGTGCCGTACCCGCC 169477 ||||| || || || ||||||| ||||| || ||||| | |||| | || || || Sbjct 2075 TTCGCGGAATCTCCTTCGGTGAGTATGAGAGTGCATTTCTCGGATTCTCGGGTTCCTGCT 2134 Query 169478 TTGTTCGCATCATCCAATTTGGGAAT 169503 ||||| |||||||| | ||||||||| Sbjct 2135 TTGTTGGCATCATCGAGTTTGGGAAT 2160 >seq73356 Length=1326 Score = 93.3 bits (102), Expect = 5e-14 Identities = 192/283 (68%), Gaps = 2/283 (1%) Strand=Plus/Plus Query 104214 TGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTG 104273 |||| | || ||| | ||| | ||| | ||||| | || || || || ||||||| Sbjct 1019 TGGAGAGGCCTCAGCATATGATTATGAGAGTGGCAGTAGGCATCCACAAGGGCGACATTG 1078 Query 104274 ATTCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCA 104332 | | || | |||| |||||| |||||| | | || | |||| ||| || || || Sbjct 1079 AAGCGGTGCTAAAGACGTACGACTTGATGTCGCGCAAGT-TCTTCACTCATGCGACTCCC 1137 Query 104333 ACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAAC 104392 || ||||||||||| ||||| || |||| || ||||| |||||||| | ||| Sbjct 1138 ACTCTCTTCAATGCCGGTACTCCGCGACCGCAGCTGTCCTCCTGCTTCCTGCTTACCATG 1197 Query 104393 AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAG 104452 ||| | ||||| || | || || |||| ||||| | | |||||||| || || ||| Sbjct 1198 AAGAATGACTCCATTGAGGGCATTTATGACACTCTCAAGCAGTGTGCGTGCATTTCTAAG 1257 Query 104453 TGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCA 104495 | ||||| || || || | ||||||| | | |||||| Sbjct 1258 TATGCTGGTGGCATAGGCGTCAGCATCCATAACATCCGAGCCA 1300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 580986206822920