Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq205478 116 1e-20 seq14360 95.1 4e-14 seq120225 91.5 4e-13 seq266743 87.8 5e-12 seq10776 87.8 5e-12 >seq205478 Length=785 Score = 116 bits (128), Expect = 1e-20 Identities = 148/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | ||||| || || ||||| ||| || || || ||||| || || Sbjct 317 CCACCACGGAGGCGGAGAACGAGGTGGAGAGTGCTCTCCTTCTGGATGTTATAGTCGGAG 376 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | || || ||||||||||| || || ||||| ||||| ||||| ||||| ||||||||| Sbjct 377 AGAGTGCGGCCATCTTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGA 436 Query 140631 ATTCCTTCTTTATCCTGAAT-TTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 || || || || |||||||| ||| || || ||||| || || | || || || || || Sbjct 437 ATGCCCTCCTTGTCCTGAATCTTTTGC-TTCACATTCTCGATGGTGTCCGAAGGCTCCAC 495 Query 140690 TTCAAGTGTAACTGTCTTTCC 140710 || || || | ||||| || Sbjct 496 ATCGAGAGTGATGGTCTTGCC 516 >seq14360 Length=163 Score = 95.1 bits (104), Expect = 4e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || ||||| ||||| || ||| || ||||| ||||| ||||| | || || ||||| Sbjct 42 AGGACAAGGTGAAGGGTGCTCTCCTTCTGAATGTTATAGTCAGAGAGAGTGCGGCCATCC 101 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||| ||||| ||||| ||||| ||||||||||| || || || ||| Sbjct 102 TCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 161 Query 140646 TG 140647 || Sbjct 162 TG 163 >seq120225 Length=1199 Score = 91.5 bits (100), Expect = 4e-13 Identities = 192/285 (67%), Gaps = 11/285 (4%) Strand=Plus/Minus Query 349607 GATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGAT 349666 |||||||| | || || || || || || |||||||| ||||| || || || ||| Sbjct 1036 GATGCTGTGGTCACCGTCCCTGCATACTTCAATGATGCTCAGCGCCAGGCTACCAAGGAT 977 Query 349667 GCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCA 349726 ||||| |||||| || | || || | | | || || || || || |||||||| ||| Sbjct 976 GCTGGTGTCATTGCTGGCCTCAAGGTCCAACGTATCATCAACGAGCCTACTGCTGCTGCA 917 Query 349727 ATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTA 349786 | || || || || || || ||| || || || |||||| ||||||| | Sbjct 916 TTCGCCTACGGTCTGGACCGCCTG---GACGTCGAGAAGAACATTCTTGTTTTTGACCTT 860 Query 349787 GGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGT---- 349842 || || || || |||||||| | || || || |||| |||| | ||||| || Sbjct 859 GGAGGAGGAACATTTGATGTCACTCTCCTGACCATTGACCAGGGTGTCTTTGAGGTGCTT 800 Query 349843 TAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887 | | |||| || ||||| ||||||||||| || || || || Sbjct 799 TCTACCAAC----GGAGATACCCATCTTGGTGGTGAGGACTTCGA 759 >seq266743 Length=788 Score = 87.8 bits (96), Expect = 5e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| |||||||||||| || |||||| | | Sbjct 572 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGCACGGGGATCGATA 513 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 512 CCCCGCATCTCCA 500 >seq10776 Length=1512 Score = 87.8 bits (96), Expect = 5e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | || ||||| ||||| || ||| || || || ||||| || Sbjct 496 CCACCACGAAGGCGAAGGACAAGGTGAAGGGTGCTCTCCTTCTGGATGTTATAGTCGCTC 437 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | || || ||||| ||||| || |||||||||||||| || || ||||||||||||||| Sbjct 436 AGAGTGCGGCCATCCTCAAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGATCAGGAGGA 377 Query 140631 ATTCCT 140636 || ||| Sbjct 376 ATGCCT 371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509197500577349