Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq66070 113 5e-20 seq73356 111 2e-19 seq19842 104 3e-17 seq8846 100 3e-16 >seq66070 Length=901 Score = 113 bits (124), Expect = 5e-20 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 78475 AGATCCCGGACCAGGTGCCGGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGG 78534 ||||| ||| || || | ||| | ||| |||||| || ||||| ||||| | Sbjct 636 AGATCATGGAGCAAGTACTTGTTTACAATGGTGAACTCTCCAGCCAGAACTCGGCGAGTG 695 Query 78535 TAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAG 78594 || ||||||| ||| | ||||||| | ||| ||||| || |||||||||||||| || Sbjct 696 TACATGTTGGAGGTGAAAGGCTCGACGGACTCATTGTTACCAATGATCTGGGCGGTTGAA 755 Query 78595 GCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACC 78654 || |||||||| ||||| | || ||||| || |||| |||||| ||| |||| || Sbjct 756 GCCGTCGGCATAGGTGCAAGGAGAAGAGAGTTGCGAATGCCATGCTCCTTAATCTTCTCC 815 Query 78655 TTTAGGCCGTCCCAA 78669 || ||||| ||||| Sbjct 816 TTCAGGCCAGCCCAA 830 Score = 107 bits (118), Expect = 2e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 20344 CCTCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCC 20403 ||| |||| |||| ||| || || |||||||||| | ||| | || || ||||| Sbjct 821 CCTGAAGGAGAAGATTAAGGAGCATGGCATTCGCAACTCTCTTCTCCTTGCACCTATGCC 762 Query 20404 GACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAA 20463 ||| || || |||||||||||||| || ||||| ||| | ||||||| | ||| |||| Sbjct 761 GACGGCTTCAACCGCCCAGATCATTGGTAACAATGAGTCCGTCGAGCCTTTCACCTCCAA 702 Query 20464 CATCTACTTGCGTCGTACACTGGCCGGTGAGTTCGTCATGGTAAACAAGCACCTGGTCC 20522 ||| ||| || || ||||| || |||||| ||| ||||||||| || || ||| Sbjct 701 CATGTACACTCGCCGAGTTCTGGCTGGAGAGTTCACCATTGTAAACAAGTACTTGCTCC 643 >seq73356 Length=1326 Score = 111 bits (122), Expect = 2e-19 Identities = 135/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 79654 CCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCC 79713 || ||||| || | |||| || ||| ||| |||| |||||| || || || |||||| Sbjct 1274 CCTATGCCACCAGCATACTTAGAAATGCACGCACACTGCTTGAGAGTGTCATAAATGCCC 1215 Query 79714 TCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTA 79773 || || ||||| | |||||| | | |||||||||| |||| ||| || ||| Sbjct 1214 TCAATGGAGTCATTCTTCATGGTAAGCAGGAAGCAGGAGGACAGCTGCGGTCGCGGAGTA 1155 Query 79774 CCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTAC 79833 ||||| |||||||| || || ||||| || ||||||||||| | ||||| |||||| Sbjct 1154 CCGGCATTGAAGAGAGTGGGAGTCGCATGAGTGAAGAACTTGCGCGACATCAAGTCGTAC 1095 Query 79834 GTCT 79837 |||| Sbjct 1094 GTCT 1091 Score = 109 bits (120), Expect = 6e-19 Identities = 169/239 (71%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 19097 GAGACGCCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCC- 19155 |||| ||||||| | | | ||| |||| || || |||||||| | |||| | Sbjct 1021 GAGAGGCCTCAGCATATGATTATGAGAGTGGCAGTAGGCATCCACAAGGGCGACATTGAA 1080 Query 19156 GCGAGTCCGCGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGAC 19215 ||| || | |||| |||||| ||||| | ||||||||||| || ||||| || || Sbjct 1081 GCG-GTGCTAAAGACGTACGACTTGATGTCGCGCAAGTTCTTCACTCATGCGACTCCCAC 1139 Query 19216 CCTTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAA 19275 || ||||| |||||||| |||||| |||| ||| ||||| | | ||||| Sbjct 1140 TCTCTTCAATGCCGGTACTCCGCGACCGCAGCTGTCCTCCTGCTTCCTGCTTACCATGAA 1199 Query 19276 GGATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGT 19334 | ||||| |||||||||||| || || || |||||| |||| ||| ||| || |||| Sbjct 1200 GAATGACTCCATTGAGGGCATTTATGACACTCTCAAGCAGTGTGCGTGCATTTCTAAGT 1258 >seq19842 Length=884 Score = 104 bits (114), Expect = 3e-17 Identities = 103/131 (79%), Gaps = 2/131 (2%) Strand=Plus/Plus Query 59989 TAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGG 60047 |||| ||||| ||| || || || ||||| |||||||| || || || | || |||||| Sbjct 74 TAGCCTTTGC-TGCAGTTGAGGGCATCTTTTTCTCTGGATCCTTTTGCTCCATCTTCTGG 132 Query 60048 CTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGAC 60107 ||||| |||||||| |||||||| || || | || ||||||||||| || |||||| Sbjct 133 CTCAAGAAGCGTGGTCTCATGCCAGGACTCTGCTTTTCCAACGAGCTTATCAGCCGGGAT 192 Query 60108 GAGGGCCTCCA 60118 |||||||| || Sbjct 193 GAGGGCCTTCA 203 >seq8846 Length=717 Score = 100 bits (110), Expect = 3e-16 Identities = 349/539 (65%), Gaps = 12/539 (2%) Strand=Plus/Plus Query 79057 GATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCAC 79116 || || ||||||||||| || |||||| ||| || ||||||||| |||||||| Sbjct 145 GAAGCAAGGTTGCACACAGCGACCTCGTCAGGGGCAGTGTACTCGATGATCTCTGTGCAA 204 Query 79117 AAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCC 79176 | ||| || |||||||| || | |||| || || ||| ||| ||| |||| Sbjct 205 AGATTGCTGGATTTGATGGTCCCCAGATTCTGTTGATTAGATTTCCGGTTGCAGTGGTCC 264 Query 79177 TTGTAGCACATGTACGGCGTCCCGGTCTCAACCTG--ACTCTTGAGAACGCCGTCCCAGA 79234 ||||| |||||| || || || ||||||| ||| | ||| | || ||| || ||| Sbjct 265 TTGTACAGCATGTAAGGGGTGCCAGTCTCAATCTGGGAATCTAG-GATCGCAAACC-AGA 322 Query 79235 TGTCCCGGGCCCGGACAACC-TTCTTG---TACCGACCCTGTGCGACGTACGTCCGGTAC 79290 | | | ||| || ||| |||||| | || | || | | ||| || || Sbjct 323 GCTGCTGAGCCTTCACCACCCTTCTTGCCTTTCCTTCTCTCT----CATACTTCTCATAA 378 Query 79291 AACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATC 79350 | | | || | || || | || || || | || ||||||||| ||||| | | Sbjct 379 AGAGCCTCAAACTCGTCTCCCCACACGTCAGGTAACCCTCGGCACTCGTTAGGGCAGAAC 438 Query 79351 AGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCC 79410 || ||| || ||| | | || | |||||||||||| || ||||||| || Sbjct 439 AGAGACCACTCGCCGTTCGCTTGTACGCGTTTCATGAAGAGGTCTGGAATCCACATAGCG 498 Query 79411 GTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAG 79470 ||| | || | | || || | ||| || ||| || || | ||| Sbjct 499 TAGAATAAATCTCTGGCGCGATGAAGTTCATTGCCATGATTCTTTTTCAAGTCCAAAAAC 558 Query 79471 TCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCG 79530 || | |||||||| ||||| ||||| || || || || || || |||||||||||||| Sbjct 559 TCGAATATGTCGGCATGCCAAGGCTCAAGGTACATAGCAAATGAGCCCTTGCGCTTGCCT 618 Query 79531 CCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCC 79589 || ||||| | ||||| | || || | |||||| || | ||||| || || ||||| Sbjct 619 CCACCCTGATCTACGTATCTAGCAGTATCGTTGAAGACCCTCAGCATAGGGACAATGCC 677 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 19415 GGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGC 19474 || || ||||| ||||| | ||||||||| | || || || ||||| | ||||| || Sbjct 677 GGCATTGTCCCTATGCTGAGGGTCTTCAACGATACTGCTAGATACGTAGATCAGGGTGGA 618 Query 19475 GGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGAC 19525 ||||| ||||||||||| || || || ||||| ||||| ||||| || ||| Sbjct 617 GGCAAGCGCAAGGGCTCATTTGCTATGTACCTTGAGCCTTGGCATGCCGAC 567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546385669841520