Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq8846 131 2e-25 seq25550 129 6e-25 seq131199 127 2e-24 seq125140 122 9e-23 seq73356 102 9e-17 seq19842 84.2 2e-11 >seq8846 Length=717 Score = 131 bits (144), Expect = 2e-25 Identities = 190/264 (72%), Gaps = 6/264 (2%) Strand=Plus/Minus Query 53490 ATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTG 53549 |||| || || |||||||| | ||||||||| | || || | ||||| | ||||||| Sbjct 679 ATGGCATTGTCCCTATGCTGAGGGTCTTCAACGATACTGCTAGATACGTAGATCAGGGTG 620 Query 53550 GTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGG 53609 | || ||||||||||| || || || || ||||| ||||| ||||| |||||||| | | Sbjct 619 GAGGCAAGCGCAAGGGCTCATTTGCTATGTACCTTGAGCCTTGGCATGCCGACATATTCG 560 Query 53610 AGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-T 53668 ||||| | || || |||||| || | ||| ||| | | || | || | Sbjct 559 AGTTTTTGGACTTGAAAAAGAATCATGGCAATGAACTTCATCGCGCCAGAGATTTATTCT 500 Query 53669 ACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAA--GGACGAGGAGTGGT 53726 || ||| |||||||||| |||||||||||| ||| | | | || | ||| ||||||| Sbjct 499 AC-GCTATGTGGATTCCAGACCTCTTCATG--AAACGCGTACAAGCGAACGGCGAGTGGT 443 Query 53727 ACCTGATGTGCCCGAACGAGTGCC 53750 ||| | ||||| |||||||||| Sbjct 442 CTCTGTTCTGCCCTAACGAGTGCC 419 >seq25550 Length=2119 Score = 129 bits (142), Expect = 6e-25 Identities = 283/424 (67%), Gaps = 0/424 (0%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || || || |||||||| ||||||||||| | ||| |||| ||| || ||||||| Sbjct 286 CCCGTGCCAATGCCCTCACTACCGTTGACCAAGACCATAGGCAGAATGGGTACGTAAAAG 345 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995 ||||| | ||| || || || || ||| | ||| | | || || || | Sbjct 346 GAAGGCTCAATAGATTGGCCATCTTCGTCCAGGTAGTGCAAGATAGCATCATCCTCCTGC 405 Query 151996 TCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGCA 152055 ||| ||| | || |||| ||| || | ||||| || || || | ||| || || Sbjct 406 CTGAAAATCAGACGGGTCACTGGATCCAGCCTTGTGAAAATATAACGAGCGCTTGCGGCG 465 Query 152056 TCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTG 152115 |||||||| || | || |||||||| || ||| || | || | || |||||| Sbjct 466 TCCTTGCCGCCCATTATTCGAGTTCCAAATTGCCCACTAGGTACCAGCAAGTGAAGGTTG 525 Query 152116 TTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCG 152175 ||| ||| || || || |||| | || |||| | ||||| || || || Sbjct 526 TTGCTGCCTACAAAGCCTTGCGCCATGCCGATGATGGTGCTCATTAGACTGGCCTCGCCA 585 Query 152176 TGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGTC 152235 ||||| || || | ||||| | || ||| || || | ||| ||||| |||| || || Sbjct 586 TGGTGGTAGGCAGAGTGCTCAGAGACGTAACCAGCAAGCTGTGCCACTTTCACTTCATTC 645 Query 152236 GTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTCC 152295 |||||| |||||| ||| | | | |||||| |||||||| ||||||||||||||| Sbjct 646 ACCAGGTTTCTCTTGAAGCAGCAGAAGAGCACCTTCCGCTGGGAAGGTTTCAAACCGTCC 705 Query 152296 ACCA 152299 | || Sbjct 706 ATCA 709 >seq131199 Length=545 Score = 127 bits (140), Expect = 2e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||||| || ||||| |||||||| || ||| ||||||||||| || Sbjct 280 GTGAAGATGTAACGAGCACTGGCAGCGTCCTTGCCGCCCATAAGTCGCGTACCGAACTGA 339 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || || || | | |||||| | ||||||| || ||| |||| ||||||| || || Sbjct 340 CCGCTTGGGACGAGGAGGTTGATGTTGTTGCTTCCAACATAGTTCTGAGCCATATTCACT 399 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || |||| || || || ||||| ||||||||||| || | ||||| | ||| ||||| Sbjct 400 ATGGTACTATGTAGACTGGCCTCGCCATGGTGATAAGCAGAGTGCTCGGACACATAGCCA 459 Query 117485 GCCAGCTG 117492 || | ||| Sbjct 460 GCTAACTG 467 Score = 105 bits (116), Expect = 7e-18 Identities = 235/350 (67%), Gaps = 2/350 (1%) Strand=Plus/Plus Query 151868 AGCTGAATCCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGG 151927 |||| | || || || ||||| || |||||||| || || || | || || Sbjct 119 AGCTCCAGCCTGTTCCAATGCCATCGCTGCCGTTGACAAGGGCCAGAGGGATGATTGGTA 178 Query 151928 CGTAAAACTCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGT 151987 |||| || | ||||| | ||| || || || || ||| |||| ||| | | || Sbjct 179 CGTACCACACAGGCTCAATTCTTTGTCCATCCTCATCCAAGTAGTTCAGAACAGGGTCGT 238 Query 151988 CAGCCGGATCGAATATCCGTCGAGTCATAGGACTCAAACGCG-TGAAGATGTATCGGGAG 152046 || | | || ||| || | || || || | ||| | | | |||||||||| || | Sbjct 239 CATCTGCATGGAAGATATGACGGGTAAT-GTTCTCCAGCTTGGTGAAGATGTAACGAGCA 297 Query 152047 CTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGG 152106 ||||| || |||||||| || || ||||| || ||||| || || |||||||| Sbjct 298 CTGGCAGCGTCCTTGCCGCCCATAAGTCGCGTACCGAACTGACCGCTTGGGACGAGGAGG 357 Query 152107 TTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTC 152166 |||| ||||||| || || | |||||||||| |||||| || || | || ||||| Sbjct 358 TTGATGTTGTTGCTTCCAACATAGTTCTGAGCCATATTCACTATGGTACTATGTAGACTG 417 Query 152167 GCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTG 152216 || || || |||||||| || | ||||| | | || || || ||||| Sbjct 418 GCCTCGCCATGGTGATAAGCAGAGTGCTCGGACACATAGCCAGCTAACTG 467 >seq125140 Length=2305 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 152028 CGTGAAGATGTATC-GGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACT 152086 |||||||||||| | || ||| || |||||||| || ||| | | || ||||||| Sbjct 1102 CGTGAAGATGTACCTCGGCGCT-GCGGCATCCTTCCCGCCTTGGACTCTAGTACCAAACT 1160 Query 152087 GTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCA 152146 | ||| || ||||| |||| |||||||| |||||| | |||||||||| | Sbjct 1161 GACCATCCGGTATTAGGAGATTGATGTTGTTGGACCCCACGTAGTTCTGAGCCATCCCTA 1220 Query 152147 CAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATC 152206 | |||| | ||| || || || || || |||||||| | |||||| |||||| | Sbjct 1221 CGATCGCGAGCTGTAGGCTAGCCTCTCCATGGTGATAGCATGCCTGCTCACTGATGTACC 1280 Query 152207 CCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACA 152255 | |||||||| |||||||| || | ||| | || |||||||||||||| Sbjct 1281 CAGCCAACTGAGCCACCTTGATCTTCGTAGACAACTTCTTCTTGAGACA 1329 >seq73356 Length=1326 Score = 102 bits (112), Expect = 9e-17 Identities = 177/255 (69%), Gaps = 2/255 (1%) Strand=Plus/Plus Query 53174 GAGACGCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACAC 53232 |||| ||||||| || | | ||| | || || | || |||||| | |||| | | Sbjct 1021 GAGAGGCCTCAGCATATGATTATGAGAGTGGCAGTAGGCATCCACAAGGGCGACATTGAA 1080 Query 53233 GCGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAAC 53292 ||| || | ||||||||||||| ||| | |||| ||| || || || || || || Sbjct 1081 GCG-GTGCTAAAGACGTACGACTTGATGTCGCGCAAGTTCTTCACTCATGCGACTCCCAC 1139 Query 53293 CCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAA 53352 || ||||| || ||||| | || ||| |||| |||||||||| | | ||||| Sbjct 1140 TCTCTTCAATGCCGGTACTCCGCGACCGCAGCTGTCCTCCTGCTTCCTGCTTACCATGAA 1199 Query 53353 GGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTG 53412 | ||||||| || || ||||| || || || |||||| ||||||| ||| || |||| Sbjct 1200 GAATGACTCCATTGAGGGCATTTATGACACTCTCAAGCAGTGTGCGTGCATTTCTAAGTA 1259 Query 53413 GTCGGGTGGTATCGG 53427 | ||||| || || Sbjct 1260 TGCTGGTGGCATAGG 1274 >seq19842 Length=884 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 74768 GCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTT 74827 ||| ||||| | ||| || | || || ||||| | || || ||||| || |||||||| Sbjct 198 GCCCTCATCCCGGCTGATAAGCTCGTTGGAAAAGCAGAGTCCTGGCATGAGACCACGCTT 139 Query 74828 CTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAA 74887 ||| | ||| ||||||| || ||||| ||| ||| |||||||| || || ||||| Sbjct 138 CTTGAGCCAGAAGATGGAGCAAAAGGATCCAGAGAAAAAGATGCCCTCAACTGCAGCAAA 79 Query 74888 GGCGACAAG 74896 ||| ||||| Sbjct 78 GGCTACAAG 70 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545081973883400