Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq205478 131 2e-25 seq8846 122 1e-22 seq14360 105 8e-18 seq27863 95.1 1e-14 seq131199 91.5 2e-13 seq101501 84.2 2e-11 seq257104 82.4 9e-11 >seq205478 Length=785 Score = 131 bits (144), Expect = 2e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 27433 GGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAA 27492 |||||||| || ||||| || || ||| | || | ||| | ||| ||||| || Sbjct 516 GGCAAGACCATCACTCTCGATGTGGAGCCTTCGGACACCATCGAGAATGTGAAGCAAAAG 457 Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 ||||||||||||||||| |||||||| |||||||||||||| || || ||||| ||||| Sbjct 456 ATTCAGGACAAGGAGGGCATTCCTCCTGACCAGCAGCGTCTCATCTTCGCTGGCAAGCAG 397 Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTA 27612 || || |||| || || || | |||||||| |||| ||||| |||||| || || Sbjct 396 CTTGAAGATGGCCGCACTCTCTCCGACTATAACATCCAGAAGGAGAGCACTCTCCACCTC 337 Query 27613 GTCTTGCGTCTTCGCGGTGG 27632 || | || || || ||||| Sbjct 336 GTTCTCCGCCTCCGTGGTGG 317 >seq8846 Length=717 Score = 122 bits (134), Expect = 1e-22 Identities = 365/560 (65%), Gaps = 5/560 (1%) Strand=Plus/Plus Query 80884 TTCACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCT 80943 || ||||| | || ||| | | || || || |||||||| || ||||| |||| | Sbjct 121 TTTACAAAGGACGCGAGGTTGATAGAAGCAAGGTTGCACACAGCGACCTCGTCAGGGGCA 180 Query 80944 GTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGG 81003 || |||||| ||| || ||||| | ||| || || || || ||||| || | || Sbjct 181 GTGTACTCGATGATCTCTGTGCAAAGATTGCTGGATTTGATGGTCCCCAGATTCTGTTGA 240 Query 81004 TTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGT 81063 || || || |||||| ||||||||| |||||| ||||| || ||||| | ||| Sbjct 241 TTAGATTTCCGGTTGCAGTGGTCCTTGTACAGCATGTAAGGGGTGCCAGTCTCAATCTGG 300 Query 81064 GACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCG 81123 || | ||||| || ||| | || | ||||| |||||| | | || ||||| Sbjct 301 GAATCTAGGATCGCAAACCAGAGCTGCTGAGCCTTCACCACCCTTCTTGCCTTTCCTTCT 360 Query 81124 GCCACATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGG 81183 | ||||||| | ||| | || |||| | | || | |||| | || || Sbjct 361 CTCTCATACTTCTCATAAAGAGCCTCAAACTCGTCTCCCCACACGTCAGGTAACCCTCGG 420 Query 81184 CACTCGTTAGGGCACATCAGGTGCCAGTCGGTG-TCGTTCTCTACAGCCTTCATGAAAGC 81242 |||||||||||||| | ||| ||| ||| | ||| | | ||| |||||||| Sbjct 421 CACTCGTTAGGGCAGAACAGAGACCACTCGCCGTTCGCT-TGTACGCGTTTCATGAAGAG 479 Query 81243 GTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTT 81302 ||| || ||||| | ||| ||| | || | | ||| |||| || || || Sbjct 480 GTCTGGAATCCACATAGCGTAGAATAAATCTCTGGCGCGATGAAGTTCATTGCCATGATT 539 Query 81303 GAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGAT 81362 ||| || | ||| || | ||||| |||||||| ||||| || |||| || | Sbjct 540 CTTTTTCAAGTCCAAAAACTCGAATATGTCGGCATGCCAAGGCTCAAGGTACATAGCAAA 599 Query 81363 CGACCCCTTGCG---ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACG 81419 || |||||||| | |||||||| | ||||| | ||||| |||| || || | Sbjct 600 TGAGCCCTTGCGCTTGCCTCCACCCTGATCTACGTATCTAGCAGTATCGTTGAAGACCCT 659 Query 81420 CAACATAGGGATGATACCAT 81439 || |||||||| || |||| Sbjct 660 CAGCATAGGGACAATGCCAT 679 >seq14360 Length=163 Score = 105 bits (116), Expect = 8e-18 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 27496 CAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555 |||||||||||||| |||||||| |||||||||||||| || || ||||| ||||| || Sbjct 163 CAGGACAAGGAGGGCATTCCTCCTGACCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTG 104 Query 27556 GAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 ||||||| || || || | |||||||| | || ||||| ||| ||||| || ||| Sbjct 103 GAGGATGGCCGCACTCTCTCTGACTATAACATTCAGAAGGAGAGCACCCTTCACCTTGTC 44 Query 27616 TTG 27618 || Sbjct 43 CTG 41 >seq27863 Length=140 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 27448 CTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAG 27507 || || |||||| | || | ||||| ||| | ||| || || |||||||||||| Sbjct 140 CTCGATGTTGAGCCTTCGGACACCATTGAGAATGTAAAGCAGAAGATCCAGGACAAGGAG 81 Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || ||||| |||||||||||||| || || ||||| ||||| || ||||||| || Sbjct 80 GGTATCCCTCCTGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGC 21 Query 27568 ACCCTAGCAGACTATAA 27584 ||||| | ||||| || Sbjct 20 ACCCTTTCTGACTACAA 4 >seq131199 Length=545 Score = 91.5 bits (100), Expect = 2e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 32071 GGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATT 32130 ||||| ||| | ||||| | || |||||||| |||||||| || || | ||||| Sbjct 458 GGCTATGTGTCCGAGCACTCTGCTTATCACCATGGCGAGGCCAGTCTACATAGTACCATA 399 Query 32131 GTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGA 32190 || || | |||||||||| ||| || || ||| | ||| | |||| ||| || Sbjct 398 GTGAATATGGCTCAGAACTATGTTGGAAGCAACAACATCAACCTCCTCGTCCCAAGCGGT 339 Query 32191 CAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACC 32250 ||||| || || || || || |||||||| ||||| || | ||||||||||||||| Sbjct 338 CAGTTCGGTACGCGACTTATGGGCGGCAAGGACGCTGCCAGTGCTCGTTACATCTTCACC 279 >seq101501 Length=122 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 27433 GGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAA 27492 |||||||| || ||||| || || ||| | || | ||| | ||| ||||| || Sbjct 20 GGCAAGACCATCACTCTCGATGTGGAGCCTTCGGACACCATCGAGAATGTGAAGCAAAAG 79 Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 ||||||||||||||||| |||||||| |||||||||||||| Sbjct 80 ATTCAGGACAAGGAGGGCATTCCTCCTGACCAGCAGCGTCT 120 >seq257104 Length=639 Score = 82.4 bits (90), Expect = 9e-11 Identities = 68/82 (83%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 61043 AACCTTCCTCTATAACTCAGCTGGTTAGAGTGTCAGGCTGTTAACCTGAAAGTCGCAGGT 61102 |||| ||||||||| |||||| ||| |||| || ||||||||||| || |||| |||| Sbjct 342 AACCATCCTCTATAGCTCAGCAGGT-AGAGCGTGTGGCTGTTAACCACAAGGTCGGAGGT 400 Query 61103 TCGATCCCTGCTGGAGGAGCTT 61124 |||| |||| ||||||||| || Sbjct 401 TCGAGCCCTCCTGGAGGAGTTT 422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568086310630960