Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq205478 167 5e-36 seq27863 122 2e-22 seq14360 116 9e-21 seq10776 107 4e-18 seq3181 104 5e-17 seq101501 96.9 8e-15 >seq205478 Length=785 Score = 167 bits (184), Expect = 5e-36 Identities = 148/185 (80%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| |||||| ||| || ||||||||||| || | || || | |||||| Sbjct 332 AGAACGAGGTGGAGAGTGCTCTCCTTCTGGATGTTATAGTCGGAGAGAGTGCGGCCATCT 391 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| || || || ||||||||||||| || ||||||||| Sbjct 392 TCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 451 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || |||||||| ||||| || ||||||||||| || || || ||||||||||| ||| Sbjct 452 TGAATCTTTTGCTTCACATTCTCGATGGTGTCCGAAGGCTCCACATCGAGAGTGATGGTC 511 Query 211083 TTTCC 211087 || || Sbjct 512 TTGCC 516 >seq27863 Length=140 Score = 122 bits (134), Expect = 2e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 210933 ATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGT 210992 ||||| || || | |||||| | ||||| |||||||||||||| |||||||| || || Sbjct 1 ATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGC 60 Query 210993 TGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTG 211052 || ||||||||||| | || ||||||||||||||||| || || || || || |||||| Sbjct 61 TGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTCTGCTTTACATTCTCAATGGTG 120 Query 211053 TCAGAGCTTTCAACCTCGAG 211072 || || ||||| ||||| Sbjct 121 TCCGAAGGCTCAACATCGAG 140 >seq14360 Length=163 Score = 116 bits (128), Expect = 9e-21 Identities = 99/122 (81%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||||||||| ||| ||| || || |||||||| || | || || | ||||| Sbjct 42 AGGACAAGGTGAAGGGTGCTCTCCTTCTGAATGTTATAGTCAGAGAGAGTGCGGCCATCC 101 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| || || || ||||||||||||| || ||||||||| Sbjct 102 TCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 161 Query 211023 TG 211024 || Sbjct 162 TG 163 >seq10776 Length=1512 Score = 107 bits (118), Expect = 4e-18 Identities = 88/107 (82%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || |||||||||||||||||||| || ||||| |||||||||||||| || || ||| Sbjct 286 CCCTCCTTGTCCTGGATCTTTTGCTTGACGTTCTCGATGGTGTCAGATGGCTCCACATCG 227 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || |||||||| |||||||| ||||| || || | |||||| || Sbjct 226 AGGGTAATCGTCTTACCCGTGAGGGTCTTGACGAAAATCTGCATCTT 180 Score = 93.3 bits (102), Expect = 1e-13 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | |||||||||||||| ||| ||| || ||||||||||| || || || Sbjct 491 ACGAAGGCGAAGGACAAGGTGAAGGGTGCTCTCCTTCTGGATGTTATAGTCGCTCAGAGT 432 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 | ||||| || |||||||| || || ||||| ||||| || || |||||||||| Sbjct 431 GCGGCCATCCTCAAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGATCAGGAGGAA 376 >seq3181 Length=966 Score = 104 bits (114), Expect = 5e-17 Identities = 84/102 (82%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 || || || ||||||||||||| || |||||||||||||||||||| ||||| || ||| Sbjct 964 AGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTTTGCTTCACATTCTCG 905 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCC 211088 |||||||| ||| || || ||||| ||||| ||||| ||| Sbjct 904 ATGGTGTCCGAGGGCTCCACATCGAGGGTGATGGTCTTGCCC 863 >seq101501 Length=122 Score = 96.9 bits (106), Expect = 8e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 || || || ||||||||||||| || ||||||||||| |||||||| ||||| || ||| Sbjct 120 AGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTTTGCTTCACATTCTCG 61 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCC 211087 |||||||| || || || ||||||||||| ||||| || Sbjct 60 ATGGTGTCCGAAGGCTCCACATCGAGAGTGATGGTCTTGCC 20 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1154518542357795