Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq205478 149 1e-30 seq1159 129 1e-24 seq2625 107 5e-18 seq84962 98.7 2e-15 seq3181 98.7 2e-15 seq27863 96.9 8e-15 seq101501 87.8 4e-12 seq102257 86.0 1e-11 >seq205478 Length=785 Score = 149 bits (164), Expect = 1e-30 Identities = 144/185 (78%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || |||||||||||| || || |||| || || |||| | ||| | |||||| Sbjct 332 AGAACGAGGTGGAGAGTGCTCTCCTTCTGGATGTTATAGTCGGAGAGAGTGCGGCCATCT 391 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| || || || ||||| || ||||| || |||||||| Sbjct 392 TCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 451 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||||||||||||| ||||||||||| || | ||||| || | ||||| ||| Sbjct 452 TGAATCTTTTGCTTCACATTCTCGATGGTGTCCGAAGGCTCCACATCGAGAGTGATGGTC 511 Query 225682 TTGCC 225686 ||||| Sbjct 512 TTGCC 516 >seq1159 Length=405 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 7507 TTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTACAACGTT 7566 |||||||||||| ||| || |||||| || ||| || ||| | || || ||| Sbjct 38 TTAGAATTAGCTCGTCCTGGAGATCAAATTTTATCTGGAAACTATCAATTGTATAATGTT 97 Query 7567 ATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGGC 7626 || |||| || ||||| ||| | |||||||| ||| | || ||||| | | ||||| Sbjct 98 ATCGTTACAGCACATGCATTTTTAATGATTTTTTTTATGGTAATGCCTATCTTAATAGGT 157 Query 7627 GGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAGG 7686 | ||| |||||||| || |||||| | | |||||||| || |||||||| ||||| | Sbjct 158 GCTTTTGGAAATTGGTTTGTTCCTATTTTAATTGGTGCGCCAGATATGGCATTTCCTCGT 217 Query 7687 CTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTA 7725 | || ||||| || ||||| ||| ||||||| || ||| Sbjct 218 ATGAATAATATTAGCTTTTGGTTATTACCGCCATCATTA 256 >seq2625 Length=481 Score = 107 bits (118), Expect = 5e-18 Identities = 91/112 (81%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || ||||||||||| |||||||| || |||||||| || |||||||| ||||| ||||| Sbjct 387 AAAATTTGACCATCTGTAATAGAAATTACATTTGTTGGAATATAAGCTGAAACGTCACCA 328 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTT 4582 ||||||||||| | || ||||| ||||||| || ||||| || | |||| Sbjct 327 GCTTGTGTTTCAATAATTGGTAATGCTGTTAAAGAACCACCTCCCATTTTTT 276 >seq84962 Length=188 Score = 98.7 bits (108), Expect = 2e-15 Identities = 98/126 (78%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 7737 GGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTTC 7796 |||||| ||||| ||||| ||| |||||| |||||| |||| |||||| | | | | Sbjct 144 GGTAAGGTTCTTCGCGTTGCATCGAATTAATCCACATGCTCCGCCGCTTGTGCGGGCCCC 85 Query 7797 CGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA-TTTACGCG 7855 ||||| || |||||||||||| |||||||| |||| | | |||| || || || | ||| Sbjct 84 CGTCAATTCCTTTGAGTTTTAGCCTTGCGGCCGTACTCCCCAGGCGGGGTACTTAATGCG 25 Query 7856 TTAGCT 7861 |||||| Sbjct 24 TTAGCT 19 >seq3181 Length=966 Score = 98.7 bits (108), Expect = 2e-15 Identities = 83/102 (81%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 || || || ||||| || ||||| || |||||||| |||||||||||||||||| ||| Sbjct 964 AGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTTTGCTTCACATTCTCG 905 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCC 225687 |||||||| |||| ||||| || | ||||| ||||||||| Sbjct 904 ATGGTGTCCGAGGGCTCCACATCGAGGGTGATGGTCTTGCCC 863 >seq27863 Length=140 Score = 96.9 bits (106), Expect = 8e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 ||||| || |||||||| ||||||||||| || || || ||||| || || ||||| ||| Sbjct 25 CCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATACCCTCC 84 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGA 225656 ||||| |||||||| ||||| ||| || |||||||| || Sbjct 85 TTGTCCTGGATCTTCTGCTTTACATTCTCAATGGTGTCCGA 125 >seq101501 Length=122 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 || || || ||||| || ||||| || |||||||| || ||||||||||||||| ||| Sbjct 120 AGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTTTGCTTCACATTCTCG 61 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCC 225686 |||||||| || | ||||| || | ||||| |||||||| Sbjct 60 ATGGTGTCCGAAGGCTCCACATCGAGAGTGATGGTCTTGCC 20 >seq102257 Length=583 Score = 86.0 bits (94), Expect = 1e-11 Identities = 96/127 (76%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| ||||| ||||| || ||||||||||||| ||||||||||| | | | Sbjct 151 TGGTAAGGTTCTTCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCC 210 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATTTACGC 7854 |||||| || |||||||||| | |||||| |||| | | |||| ||| | || | || Sbjct 211 CCGTCAATTCCTTTGAGTTTCAGTCTTGCGACCGTACTCCCCAGGCGGAGTGCTTAATGC 270 Query 7855 GTTAGCT 7861 ||| ||| Sbjct 271 GTTTGCT 277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1187764316276202