Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq205478 149 1e-30 seq131199 127 4e-24 seq27863 125 1e-23 seq113153 104 5e-17 seq10776 96.9 7e-15 seq14360 89.7 1e-12 >seq205478 Length=785 Score = 149 bits (164), Expect = 1e-30 Identities = 153/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| ||||| || || || || | ||||| || || |||||||| ||||| | Sbjct 317 CCACCACGGAGGCGGAGAACGAGGTGGAGAGTGCTCTCCTTCTGGATGTTATAGTCGGAG 376 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||||||||| || || || || || || ||||| | ||| || |||||| ||| Sbjct 377 AGAGTGCGGCCATCTTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGA 436 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| || |||||| || || | ||||| |||||||||| || || Sbjct 437 ATGCCCTCCTTGTCCTGAATCTTTTGCTTCACATTCTCGATGGTGTCCGAAGGCTCCACA 496 Query 283053 TCGAGAGTGATCGTCTTACC 283072 ||||||||||| ||||| || Sbjct 497 TCGAGAGTGATGGTCTTGCC 516 >seq131199 Length=545 Score = 127 bits (140), Expect = 4e-24 Identities = 194/274 (71%), Gaps = 2/274 (1%) Strand=Plus/Plus Query 273773 CAGTTTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACC 273832 ||| || ||||| ||||| | ||||| ||| ||||||||| || || | || ||| Sbjct 273 CAGCTTGGTGAAGATGTAACGAGCACTGGCAGCGTCCTTGCCGCCCATAAGTCGCGTACC 332 Query 273833 AAACTGACC-CTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCA 273891 |||||||| || ||| | || ||| ||||||||||| || || || | |||||||| Sbjct 333 GAACTGACCGCTTGGGACG-AGGAGGTTGATGTTGTTGCTTCCAACATAGTTCTGAGCCA 391 Query 273892 TATTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGA 273951 ||||||| || || | || || ||||||| |||||||| || ||| |||| | Sbjct 392 TATTCACTATGGTACTATGTAGACTGGCCTCGCCATGGTGATAAGCAGAGTGCTCGGACA 451 Query 273952 TATAACCACTGAACTGAGCAACCTTCACATCGCTCGTCAAGTTTCGCTTGAATGCGGAAT 274011 ||| ||| ||||| | | | ||| ||| || | | |||| |||||| | || Sbjct 452 CATAGCCAGCTAACTGTGAGATCCGCACCTCGTTCTTAAGTTTTCTCTTGAAGCAGCAAA 511 Query 274012 ACAACACCTTCCGCTGCGAGGGCTTGAACCCATC 274045 |||| || ||||| || || |||||||| ||||| Sbjct 512 ACAAGACTTTCCGTTGAGAAGGCTTGAATCCATC 545 >seq27863 Length=140 Score = 125 bits (138), Expect = 1e-23 Identities = 114/141 (81%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 282918 ATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGT 282977 ||||||||||||| ||| |||||||||||||| || || || || || ||||||| ||| Sbjct 1 ATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGC 60 Query 282978 TGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGT 283036 || |||||| || |||||||||||||| |||||||| ||| ||||| | || || || Sbjct 61 TGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTCTGC-TTTACATTCTCAATGGT 119 Query 283037 GTCCGAAGCTTCGACTTCGAG 283057 |||||||| || || ||||| Sbjct 120 GTCCGAAGGCTCAACATCGAG 140 >seq113153 Length=1264 Score = 104 bits (114), Expect = 5e-17 Identities = 419/658 (64%), Gaps = 9/658 (1%) Strand=Plus/Minus Query 316184 AACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGATGATCCTCGATGTGGTGGAAAG 316243 ||||||| |||| |||||| || || ||| ||||||| || | ||| | ||| ||||| | Sbjct 969 AACGCCACTGGACGTACTGGTTTGGAGTCTTGTCAAGGTGCTGCTCAACGTGATGGAACG 910 Query 316244 CGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAAACGCTACCGTTAGTAG 316303 | ||||| || ||||| || | | | || ||||||||||| | |||| | |||| Sbjct 909 CATGCTGAGCGACGTAGGCGAACCTAAGGTTAGGATGCTTCCAGCAGTCACCGCTGGTAG 850 Query 316304 TTTCCATCTGCCCTGTTAGCACTTTAATGAGAGTACTTTTTCCCGCGCCGTTTTCACCCA 316363 | ||||| || || |||| || || || ||| || || || ||||| || | Sbjct 849 CGTTCATCTCGCCAGTCAGCAGCTTGATAAGGGTAGACTTGCCAGCACCGTTAGGTCCAA 790 Query 316364 CGACACCGATCCTGGAGTTGAGCGATACCTGGGCATTCACGTTGTCGAAGA---CCAGTT 316420 ||| ||| | ||| || || ||||| | || | || || ||| || | | Sbjct 789 GGACTGCGACACGAGAGGAAAGAGAGACCTGCACGTT---GATGCCGCAGAGAGCCTGCT 733 Query 316421 TGTCCGTCCCAGGATACTTGAAACCCACCCCGCGAAGCTTCATGATGGCACGGTCCTTCG 316480 || | | ||||| || ||||| || | | ||| | || || |||||| | Sbjct 732 TGGCAGCACCAGGGTAGGTGAAAGAGACATCCTTCATCTTAAGGACAGCCTTGTCCTTAG 673 Query 316481 AAGTGATACCCTCGAGAAAGCCGGGTTCGGGGAATTTCCACGTAGTCTTCGTCTCGGCGA 316540 | |||| ||||| ||| | || || || ||||| || | | || | | | Sbjct 672 ACTTGATGCCCTCCAGATAACCAGGCTCAGGGAAGGCGAACTTGATGGAGGTAGCCTCAA 613 Query 316541 GCGTGTAGTAACTTGCAGATTCGGGACGCTTCTTCACGAATTCGGACAGATTTCCTTTAT 316600 || |||||| || | || || || ||| || || || | || || || || | Sbjct 612 GCTCGTAGTAGCTCTTGGCCTCTGGCTTCTGCTTGACAAACTCAGCGAGGTTGCCCTTGT 553 Query 316601 ACTTCTTCAGCTTCAGGTTGGGTTCGTAATGGATGATAGAAGTACAGACAGCATCGAGGA 316660 ||| | |||||| ||| | ||||| || | || || ||||||| || |||| Sbjct 552 ACTGCACCAGCTTGCGGT---GCTCGTAGTGAAGAATGTGGGTGCAGACAGTGTCCAGGA 496 Query 316661 AACCAGAATCGTGTGATACAATCACACATGAAACGCCTTTTAGGTTGACCAGATAGTCGA 316720 | || || |||||||| || || | || | ||| || ||| | || ||||| Sbjct 495 AGCCGGAGTCGTGTGAAACGATGATACTGGTCACGTTCTTCAGGCCGCAAAGGTAGTCCT 436 Query 316721 TCAGCCAGCTCACATTCGACACAGAAAGATGGTTGGTCGGTTCGTCAAGTAGTAGTAGCT 316780 ||||| | || || | || | || || || || || ||||| || || | | Sbjct 435 GGAGCCAACGTACGTTGGCAACGTCCAAGTGATTCGTAGGCTCATCAAGCAGAAGGATGT 376 Query 316781 TCGCGTCCAACAGCATAGCGCGTGCGAGAGCAAGCTTCATTTTCCACCCCCCGGAAAG 316838 |||| || |||||||| | ||||| | ||||||||| |||| || |||||||| Sbjct 375 CAGCGTGCATAAGCATAGCTCTAGCGAGCTCGAGCTTCATTCTCCAACCTCCGGAAAG 318 >seq10776 Length=1512 Score = 96.9 bits (106), Expect = 7e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 282995 ACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTC 283054 |||||||||||| ||||||||| || ||| | ||||| ||||| || | || || || Sbjct 287 ACCCTCCTTGTCCTGGATCTTTTGCTTGACGTTCTCGATGGTGTCAGATGGCTCCACATC 228 Query 283055 GAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||| || |||||||||||||| | ||||| ||||| |||||||| || Sbjct 227 GAGGGTAATCGTCTTACCCGTGAGGGTCTTGACGAAAATCTGCATCTT 180 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| |||||||| || || || | ||||| || || |||||||| ||||| Sbjct 496 CCACCACGAAGGCGAAGGACAAGGTGAAGGGTGCTCTCCTTCTGGATGTTATAGTCGCTC 437 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||||||||| || || || || |||||||||| || || || ||| ||| Sbjct 436 AGAGTGCGGCCATCCTCAAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGATCAGGAGGA 377 Query 282993 ATACC 282997 || || Sbjct 376 ATGCC 372 >seq14360 Length=163 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 282903 GTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCG 282962 ||||| || || || ||||| ||||||| || |||||||||||||| || || || || Sbjct 57 GTGCTCTCCTTCTGAATGTTATAGTCAGAGAGAGTGCGGCCATCCTCCAGCTGCTTGCCA 116 Query 282963 GCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTG 283009 || ||||| | ||| || |||||| ||||| ||||||||||| || Sbjct 117 GCGAAGATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTG 163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1042555088040882