Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq205478 145 2e-29 seq10776 102 2e-16 seq3181 96.9 8e-15 seq101501 95.1 3e-14 >seq205478 Length=785 Score = 145 bits (160), Expect = 2e-29 Identities = 131/165 (79%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 177947 AGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAA 178006 ||| || || ||||| ||||| ||||| || |||||||||||||| || || ||||| Sbjct 517 AGGCAAGACCATCACTCTCGATGTGGAGCCTTCGGACACCATCGAGAATGTGAAGCAAAA 458 Query 178007 GATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACA 178066 |||||||||||| || || || ||||| |||||||| || || |||||||| || || || Sbjct 457 GATTCAGGACAAGGAGGGCATTCCTCCTGACCAGCAGCGTCTCATCTTCGCTGGCAAGCA 398 Query 178067 GCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGA 178111 ||| |||||||| | ||||| |||| |||||| |||| || || Sbjct 397 GCTTGAAGATGGCCGCACTCTCTCCGACTATAACATCCAGAAGGA 353 >seq10776 Length=1512 Score = 102 bits (112), Expect = 2e-16 Identities = 83/101 (82%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| || || ||||| |||||||| ||||| || ||| Sbjct 186 CAGATTTTCGTCAAGACCCTCACGGGTAAGACGATTACCCTCGATGTGGAGCCATCTGAC 245 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 ||||||||||||||||| |||||||| |||||||| || || Sbjct 246 ACCATCGAGAACGTCAAGCAAAAGATCCAGGACAAGGAGGG 286 >seq3181 Length=966 Score = 96.9 bits (106), Expect = 8e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 177948 GGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAG 178007 || || || ||||||||||| ||||| ||| |||||||||||||| || || |||||| Sbjct 864 GGCAAGACCATCACCCTCGATGTGGAGCCCTCGGACACCATCGAGAATGTGAAGCAAAAG 923 Query 178008 ATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 || |||||||| || || || ||||| |||||||| || || Sbjct 924 ATCCAGGACAAGGAGGGCATTCCTCCTGACCAGCAGCGTCT 964 >seq101501 Length=122 Score = 95.1 bits (104), Expect = 3e-14 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 177947 AGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAA 178006 ||| || || ||||| ||||| ||||| || |||||||||||||| || || ||||| Sbjct 19 AGGCAAGACCATCACTCTCGATGTGGAGCCTTCGGACACCATCGAGAATGTGAAGCAAAA 78 Query 178007 GATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 |||||||||||| || || || ||||| |||||||| || || Sbjct 79 GATTCAGGACAAGGAGGGCATTCCTCCTGACCAGCAGCGTCT 120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1198919546715702