Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq205478 136 4e-27 seq14360 116 3e-21 seq10776 89.7 5e-13 seq27863 84.2 2e-11 >seq205478 Length=785 Score = 136 bits (150), Expect = 4e-27 Identities = 123/155 (79%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 |||||| || || || || | || || || || |||||||||||||| ||||||||||| Sbjct 313 ACCGCCACCACGGAGGCGGAGAACGAGGTGGAGAGTGCTCTCCTTCTGGATGTTATAGTC 372 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 |||||| ||||| | || || ||||||||||| ||||| || || ||||| ||||| | Sbjct 373 GGAGAGAGTGCGGCCATCTTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGG 432 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCA 41786 |||| || |||||||||| || |||||||||| Sbjct 433 AGGAATGCCCTCCTTGTCCTGAATCTTTTGCTTCA 467 >seq14360 Length=163 Score = 116 bits (128), Expect = 3e-21 Identities = 96/117 (82%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || || || || |||||||||||||||||||||||||| ||||| ||||| | || || Sbjct 45 ACAAGGTGAAGGGTGCTCTCCTTCTGAATGTTATAGTCAGAGAGAGTGCGGCCATCCTCC 104 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 ||||||||||| ||||| || || ||||| ||||| | |||| || |||||||||| Sbjct 105 AGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 161 >seq10776 Length=1512 Score = 89.7 bits (98), Expect = 5e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 ||||| || || || || | || || || || |||||||||||||| |||||||||||| Sbjct 499 CCGCCACCACGAAGGCGAAGGACAAGGTGAAGGGTGCTCTCCTTCTGGATGTTATAGTCG 440 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 || ||||| | || || |||||||| || || || ||||||||||| || || | Sbjct 439 CTCAGAGTGCGGCCATCCTCAAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGATCAGGA 380 Query 41753 GGAACGC 41759 |||| || Sbjct 379 GGAATGC 373 >seq27863 Length=140 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 41681 ATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGC 41740 ||||| ||||| || |||||||| | || || ||||||||||| ||||| ||||| ||| Sbjct 1 ATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGC 60 Query 41741 TGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT 41784 || ||||| | || | | |||||||||| ||| || ||||| Sbjct 61 TGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTCTGCTT 104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 460501112639600