Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq25 125 6e-24 >seq25 Length=633890 Score = 125 bits (138), Expect = 6e-24 Identities = 284/425 (67%), Gaps = 4/425 (1%) Strand=Plus/Plus Query 18788 GGGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGA 18847 |||||| | |||||| | ||||||||||| ||| | ||||| || ||||| ||| || Sbjct 455911 GGGGGATTTGGGCCCCGTCTACGGCTTCCAATGGCGGCATTTCGGGGCGGAGTATTCGGA 455970 Query 18848 CTGTCAATCAAACTATTTACAGC--AAGGAATCGATCAGCTGCAAACTGTTATAGATACA 18905 | || || |||| || | |||| ||||| ||| || | || || Sbjct 455971 CATGCACGCAGACTAC--ACTGGCAAAGGCATCGACCAGTTGGCTCGGGCAATCACCACC 456028 Query 18906 ATTAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATC 18965 || || |||||||| || || || ||| ||||| | ||||| || |||| | Sbjct 456029 ATCAAGGACAACCCAGAGGATCGCCGCATCATTGTATCGGCCTGGAACCCCGCGGATTTG 456088 Query 18966 CCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAA 19025 |||| || || || ||||||| ||| || || || ||||| ||| |||| || Sbjct 456089 GGAAAGATGGCCCTGCCGCCGTGTCACATGTTTTGCCAATTCTACGTGGCAGACGGAGAG 456148 Query 19026 TTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATT 19085 | || || || | || ||| | || | || ||||| | || || |||||||| ||| Sbjct 456149 CTCTCTTGTCAGATGTATCAGCGTTCCGCAGACATGGGGTTGGGTGTGCCGTTCAATATT 456208 Query 19086 GCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGAT 19145 || || ||||| | || | | ||||| || || || | ||| ||||||| Sbjct 456209 GCCTCTTACGCACTCTTGACACGCTTGGTAGCTCAAGTCTGTGGCTTGAAAGCCGGAGAG 456268 Query 19146 TTAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGTG 19205 || ||||| || || |||||||||||| | ||| |||||||| |||| || | |||| | Sbjct 456269 TTCATTCACACGATTGGGGATGCACATGTGTACCTGAATCATGTAGACGCGCTGAAAGAG 456328 Query 19206 CAGCT 19210 ||||| Sbjct 456329 CAGCT 456333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399500669634780