Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq25 172 6e-38 >seq25 Length=633890 Score = 172 bits (190), Expect = 6e-38 Identities = 501/764 (66%), Gaps = 23/764 (3%) Strand=Plus/Minus Query 145635 GATCCTGAGCCTGGGAAAGGGCCGGGGGCTCCTGGTCAGCTGGAGCTTCAGGGGCTCCAC 145694 ||||| ||| | || || | || ||| ||| ||| ||||| ||||| | || || Sbjct 456370 GATCCGCAGCTTCGGGAAAGATCGAGGGGTCCGGGTGAGCTGCTCTTTCAGCGCGTCTAC 456311 Query 145695 GTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCC 145754 || || ||||| || || || ||||| | ||| ||||| || |||| | | ||| Sbjct 456310 ATGATTCAGGTACACATGTGCATCCCCAATCGTGTGAATGAACTCTCCGGCTTTCAAGCC 456251 Query 145755 CGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCC 145814 || || || |||| | |||| || | ||| ||| || ||||| ||||| || Sbjct 456250 ACAGACTTGAGCTACCAAGCGTGTCAAGAGTGCGTAAGAGGCAATATTGAACGGCACACC 456191 Query 145815 CAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTA 145874 || ||||||||| | || ||||| |||| ||| || |||||||| ||| | |||||||| Sbjct 456190 CAACCCCATGTCTGCGGAACGCTGATACATCTGACAAGAGAGCTCTCCGTCTGCCACGTA 456131 Query 145875 GAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCA 145934 ||| ||||| | | ||| || |||||||||||||| || ||||| |||||||| Sbjct 456130 GAATTGGCAAAACATGTGACACGGCGGCAGGGCCATCTTTCCCAAATCCGCGGGGTTCCA 456071 Query 145935 GGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCTCTTGATCTCCCCTATCAGGTCCCT 145994 ||| | | | || | | ||| ||||| |||||| || | || Sbjct 456070 GGCCGATACAATGATGCGGCGATCCTCTGGGTTGTCCTTGATGGTGGTGAT----TGCCC 456015 Query 145995 GAG----CTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGA-GTCCACGTACGCGGCC 146049 ||| |||||| | ||| | || ||| |||| | || | |||| ||| | ||| Sbjct 456014 GAGCCAACTGGTCGATGCCTTTGCCAGTGTAGTCTG-CGTGCATGTCCGAATACTCCGCC 455956 Query 146050 CCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGCCCC 146109 ||||| |||| ||| ||||| ||||||||||| |||| ||||| |||| ||| Sbjct 455955 CCGAAATGCCGCCATTGGAAGCCGTAGACGGGGCCCAAATCCCCCTCTTCCCGGTG---- 455900 Query 146110 AGCCCGGCCC----GGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCC 146165 || ||||| | | || | ||||| || ||| |||||||||| | Sbjct 455899 AGAAAGGCCCAATTTGTCCAGATATTCCCGAGAGGAGTTCCCGTCCCAGATTCCAATTTT 455840 Query 146166 CCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAG 146225 || | | | ||| | || || || || ||||||||| | || |||||| Sbjct 455839 TTTCTCCTTCAAATAATTCGCATCGGTCGATCCGGAGATGAACCACAAGAGTTCTTCGGC 455780 Query 146226 GACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGAA---CTGGCCCCGCAGGGA 146282 ||||| | ||| ||||||| ||||||||| |||| ||| || || | |||||||| Sbjct 455779 CACCCCGCGCCAAAAGACCCGCTTGGTGGTGAGCAAGGGAAAGGTCTCATCACGCAGGGA 455720 Query 146283 GTACTTGGCCTGGTCCCCGAAGACGGACAGGGTGCCCACGCCCGTCCTGTCCCCCCTGCG 146342 || |||| | || || || |||||||| ||||| |||||||| || Sbjct 455719 AAACCGAAGCTGGGCGCCAAATTTTGAGAGGGTGCCTGTCTGCGTCCGGTCCCCCCGCCG 455660 Query 146343 CACCCCGTTCGCCAGGATCTCCCTGACGGTGTTG-AGGTACTGG 146385 | ||||| | | | ||||| |||| | || | ||||||||| Sbjct 455659 CTTCCCGTGCTCGATGATCT-CCTGCACGAGTCGCAGGTACTGG 455617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590071754843360