Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3 138 1e-27 seq4 134 1e-26 >seq3 Length=1384164 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || |||||||| |||||||| | || ||||| ||| | Sbjct 138012 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACATTGGATGTCGAGCCCAGC 138071 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | ||| | ||| |||| |||| ||||| |||||||| ||| | || ||| Sbjct 138072 GATACCATCGAAAATGTGAAGCAAAAGATTCAAGACAAGGAGGGCATTCCCCCCGATCAG 138131 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | ||| || || |||||||| |||| ||||| || ||||||||| Sbjct 138132 CAGCGCCTAATTTTCGCAGGAAAGCAGCTGGAAGACGGACGCACGCTGTCTGACTACAAC 138191 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 || ||||| ||| | || |||| | || ||||||||| | || || ||| Sbjct 138192 ATTCAGAAAGAGTCAACCTTGCACTTGGTCTTGCGCTTGCGTGGTGGGGGC 138242 >seq4 Length=1364975 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || ||||| |||||||| |||||||| ||||||| || ||| Sbjct 829421 ATGCAAATCTTTGTTAAGACGCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCCAGT 829362 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||| | || |||| ||||| ||||| |||||| | || ||| Sbjct 829361 GACACGATCGAGAATGTGAAGCAGAAGATTCAGGACAAGGAGGGTATCCCCCCTGATCAG 829302 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||| | ||||| || |||||||| |||| |||||| | ||||||||| Sbjct 829301 CAGCGCCTCATTTTTGCGGGGAAGCAGCTGGAGGACGGGCGCACGTTGTCTGACTACAAC 829242 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || ||||| ||| | || || ||| | || |||| ||| | ||||| Sbjct 829241 ATTCAGAAAGAGTCTACCCTACATTTGGTCCTGCGATTGCGTGGCGG 829195 Score = 98.7 bits (108), Expect = 1e-15 Identities = 200/296 (68%), Gaps = 12/296 (4%) Strand=Plus/Plus Query 116837 GAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTAT 116896 ||||| || ||||||||||| || || |||||||| || || | ||| || ||||| Sbjct 237555 GAGGCTCGATGCTTCTACGGTTTCCAAATCGCCATCGAAAATATTCACAGTGAGGTGTAT 237614 Query 116897 TCGACCCTCATCGACACGTACGT---GCGCTCTTCGGAG---GAGAAGCTCCGTTTGTTG 116950 || ||| || ||||| ||| | | | | || ||| | |||||| || Sbjct 237615 TCCCTCCTTATTGACACTTACATCAAGAACCCATCCGAGAAACACAAGCTC------TTA 237668 Query 116951 AACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATC 117010 |||||||| ||||| | || || ||| | ||||| |||||||| || ||| | Sbjct 237669 AACGCCATTGAGACCGTCCCTTGTGTCCGACGCAAGGCGCGTTGGGCGCTCCGGTGGTGC 237728 Query 117011 GCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTC 117070 | | ||| | || | || | ||||||| || | ||||| || ||||| |||||| || Sbjct 237729 GACCGCAAGTACGCGTCTTTTGCCGAGCGCTTGATCGCCTTTGCAGCCGTGGAGGGCATC 237788 Query 117071 TTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCC 117126 || || || ||| ||| | | || || ||| | ||||| || ||||| ||||| Sbjct 237789 TTTTTCTCCGGCTCCTTCTGCTCGATTTTCTGGTTGAAGAAGCGGGGCCTGATGCC 237844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515214794875840