Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq3 149 4e-31 seq4 134 9e-27 seq5 105 4e-18 seq9 84.2 1e-11 >seq3 Length=1384164 Score = 149 bits (164), Expect = 4e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || |||| | || |||| ||| || || |||||||| ||||||||||| ||| Sbjct 138238 CCACCACGCAAGCGCAAGACCAAGTGCAAGGTTGACTCTTTCTGAATGTTGTAGTCAGAC 138179 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| || |||| |||| |||||| ||||||||||| || |||||||| ||| ||| Sbjct 138178 AGCGTGCGTCCGTCTTCCAGCTGCTTTCCTGCGAAAATTAGGCGCTGCTGATCGGGGGGA 138119 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||||||||| | || | || | |||| | | ||||| Sbjct 138118 ATGCCCTCCTTGTCTTGAATCTTTTGCTTCACATTTTCGATGGTATCGCTGGGCTCGACA 138059 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||| || || || || || ||||||||||| Sbjct 138058 TCCAATGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 138012 >seq4 Length=1364975 Score = 134 bits (148), Expect = 9e-27 Identities = 172/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 34154 TCGTCGAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTG 34213 |||| || ||||| |||| | ||| |||| |||| ||| |||||||| |||||| Sbjct 829186 TCGTAGACACCGCCACGCAATCGCAGGACCAAATGTAGGGTAGACTCTTTCTGAATGTTG 829245 Query 34214 TAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGG 34273 ||||| |||| | || |||| |||| |||||| || || |||||||| |||||||| Sbjct 829246 TAGTCAGACAACGTGCGCCCGTCCTCCAGCTGCTTCCCCGCAAAAATGAGGCGCTGCTGA 829305 Query 34274 TCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTC 34333 || ||| | | ||||||||| ||||| ||||| | || | |||| || | Sbjct 829306 TCAGGGGGGATACCCTCCTTGTCCTGAATCTTCTGCTTCACATTCTCGATCGTGTCACTG 829365 Query 34334 GATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 | || ||||| | ||||||||| ||||| || || || || |||||||| |||||| Sbjct 829366 GGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTAACAAAGATTTGCATC 829422 >seq5 Length=1358244 Score = 105 bits (116), Expect = 4e-18 Identities = 116/152 (76%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 34236 CGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGT 34295 ||||||||||||||||| | || ||||| ||||||||||| ||| | || |||||| | Sbjct 769661 CGTCCAACTGCTTGCCTCCAAAGATGAGACGCTGCTGGTCAGGGGGAATGCCCTCCTTCT 769602 Query 34296 CGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATG 34354 | || ||| || ||||| | ||| | || |||||| ||| |||||||||| |||| Sbjct 769601 CCGCGATC-TTGGCTTTCACCTCGTCGATGGAATCGCCTTCTTCCACGTCCACCGAGATG 769543 Query 34355 GTTTTGCCGGTGAGAGTTTTCACAAAGATCTG 34386 || || ||| |||| || ||||| |||||| Sbjct 769542 GTCTTCCCGTTGAGTGTCTTCACGTTGATCTG 769511 >seq9 Length=1164708 Score = 84.2 bits (92), Expect = 1e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 34235 TCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTG 34294 || || | ||||||||| || |||||||| |||||||| || ||| | | ||||||| Sbjct 608021 TCCTCGAGCTGCTTGCCGGCAAAAATGAGGCGCTGCTGATCAGGGGGGATCCCCTCCTTG 608080 Query 34295 TCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATG 34354 || ||||||||||| | || | || | ||| | | || ||||||| || ||| Sbjct 608081 TCCTGGATCTTTTGCTTCACATTCTCAATGGTGTCGCTGGGCTCCACGTCCAAAGTAATG 608140 Query 34355 GTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 || ||||| || || || || || || || ||||| ||| Sbjct 608141 GTCTTGCCCGTCAGGGTCTTAACGAAAATTTGCATGGCT 608179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323069306791040