Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq25 109 4e-19 >seq25 Length=633890 Score = 109 bits (120), Expect = 4e-19 Identities = 273/415 (66%), Gaps = 0/415 (0%) Strand=Plus/Plus Query 20207 ACCGTCAAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTG 20266 |||| |||||||||||||||| || || || || || |||||| | ||||| || || | Sbjct 455901 ACCGGGAAGAGGGGGATTTGGGCCCCGTCTACGGCTTCCAATGGCGGCATTTCGGGGCGG 455960 Query 20267 AATATGTTGACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTA 20326 | ||| |||||| || || | || ||| |||| | || || || | | Sbjct 455961 AGTATTCGGACATGCACGCAGACTACACTGGCAAAGGCATCGACCAGTTGGCTCGGGCAA 456020 Query 20327 TTAATTTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTA 20386 | | || || |||||| | || | | || ||| ||| ||||||||| | Sbjct 456021 TCACCACCATCAAGGACAACCCAGAGGATCGCCGCATCATTGTATCGGCCTGGAACCCCG 456080 Query 20387 AAGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTA 20446 ||| || ||||| |||| || ||||| ||| | |||||||| ||||| || Sbjct 456081 CGGATTTGGGAAAGATGGCCCTGCCGCCGTGTCACATGTTTTGCCAATTCTACGTGGCAG 456140 Query 20447 ATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTT 20506 | || | || ||||| |||||||| || ||||| || ||||| ||||||| || | Sbjct 456141 ACGGAGAGCTCTCTTGTCAGATGTATCAGCGTTCCGCAGACATGGGGTTGGGTGTGCCGT 456200 Query 20507 TCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAA 20566 |||||||||| ||| || || | || || | || || || | || ||| Sbjct 456201 TCAATATTGCCTCTTACGCACTCTTGACACGCTTGGTAGCTCAAGTCTGTGGCTTGAAAG 456260 Query 20567 CGGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGA 20621 | || || || | ||||| || || || || ||| | ||||| |||||| |||| Sbjct 456261 CCGGAGAGTTCATTCACACGATTGGGGATGCACATGTGTACCTGAATCATGTAGA 456315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399180672302380