Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq6 167 5e-36 seq29 86.0 1e-11 >seq6 Length=1241202 Score = 167 bits (184), Expect = 5e-36 Identities = 808/1279 (63%), Gaps = 51/1279 (4%) Strand=Plus/Plus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 || || || || || | ||||| || ||||||||||| || ||||| || || || || Sbjct 393461 GACTTTGATTATGACTACTTTGGCTTTAAAACGCTGGAAAAGTCGTACCTTCTTAAGATG 393520 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 | || | |||| || ||||||||| | ||||| ||||| | || || ||| Sbjct 393521 AACGGGGTAGTTATGGAGCGCCCCCAGCACATGATCATGCGTGTGGCAATTGGTATCCAC 393580 Query 248929 AAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGA----- 248983 || || |||| || | ||| ||||| |||| ||| |||| | Sbjct 393581 AAAGAGAACATTGACGCGGCGCTGGAGACCTACAATCTCATGT-----CGCTCAAACTTT 393635 Query 248984 TGACACATGCCACACCGACGCTCTTCAACGCCGGTAC----CGTCAACAATCAGCTGAGC 249039 | || ||||| || || || || ||||| ||||| || || | ||| || | Sbjct 393636 TCACGCATGCTACGCCTACACTTTTCAATGCCGGCACACCGCGGCCCCAA----CTCTCC 393691 Query 249040 TCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAA 249099 || ||||| || || ||||| | || ||||| |||||||||| || ||||| || || Sbjct 393692 TCCTGCTTCCTCCTGACCATGAAGGAGGACTCCATCGACGGCATCTACGACACCCTCAAG 393751 Query 249100 CAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGA 249159 || || ||||| ||||| ||||| || || || | ||| || |||||| || Sbjct 393752 CAATGCGCTGCCATTTCCAAATTTGCGGGTGGGATTGGCGTATCCATCCACAACATTCGG 393811 Query 249160 GCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTT 249219 ||| | || ||||| || | || || | | || |||||||| | || Sbjct 393812 GCGCGAGACTCCTACATTCGTGGATCGAACGGCACCTCCAACGGCATCGTACCTATGCTC 393871 Query 249220 CGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCG 249276 || || | || ||| | | | || |||||| ||| || || ||||| || Sbjct 393872 CGCGTTTTCAACGATACGGCCCGCTACGTCGACCAGGGCGGAGGCAAGCGCAAGGGTTCC 393931 Query 249277 TTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAG 249336 |||||||| || | || ||||| || || || || || ||||||||| || ||| Sbjct 393932 TTCGCCATCTACCTAGAGCCCTGGCATGCAGACATCTTTGAATTCCTGGACCTGCGTAAG 393991 Query 249337 AACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGAC 249396 ||| ||||||||||| | | | || ||||| || ||||||| ||| ||| ||||| Sbjct 393992 AACCACGGCAACGAGTTGGAGCGTGCACGTGATCTGTTCTACGCCCTCTGGACGCCCGAC 394051 Query 249397 TTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGCC 249456 |||||||||| ||||| || |||||| || ||| | ||| ||| || ||| | Sbjct 394052 CTGTTCATGCGGCGCGTGGAGAGCGACGGGGACTGGTCCCTTTTTTGCCCCAACGAGTGC 394111 Query 249457 CCGGACCTCATCGATCTACACGGCGCCGACTTCGACCAAGCCTATAAGAAATACGAATCC 249516 |||| ||| || | ||||| || || |||| ||| | ||||| Sbjct 394112 CCGGGCCTGGCGGACGTGTGCGGCGAGGAGTTTAACCAGCTCTACGCCAGCTACGAGAAG 394171 Query 249517 AACGGCATCG---GCAAGACAATCAAGGCTCGGACCCT---TTTTGCGAAGGTGGTGGAG 249570 | || | | ||||| || ||||| | | || || |||| | |||| Sbjct 394172 AGTGGGAAAGCACGCAAGGTTATTAAGGCCCAGCAGCTCTGGTTCGCGA---TTCTGGAC 394228 Query 249571 TCCCAGATAGAGACAGGGGGGCCGTATTATTTGTTCAAAGACGCGTGCAACGCCAAGAGT 249630 |||||| | |||||||| ||| || ||||||| ||||| |||||| || Sbjct 394229 TCCCAGGTGGAGACAGGCACGCCTTACATGCTGTTCAAGGACGCCTGCAACCTGAAATCA 394288 Query 249631 AACCAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTGTGCAGAGGTGATTCAATAC 249690 ||||| | | | | || |||||| || || ||||| || | ||| | || | ||| Sbjct 394289 AACCAGCAGAACTTGGGCACCATCAAATCATCCAATCTGTGCACGGAGATCATCGAGTAC 394348 Query 249691 TCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGC-------AA-------GCATCAATC 249736 |||| || ||| | || |||||||||||||| || |||| ||| Sbjct 394349 ACGTCGCCCGATGAGGTCGCGGTCTGCAACCTGGCCTCCGTGAACCTTTCCGCATTCATC 394408 Query 249737 --TCGTGAGG---CACGT-GAGGGCGGAC-AGGACGTTCGACTTCGAGCGTCTTCACCGG 249789 | |||| | || | ||| ||| || | |||| | |||| || | Sbjct 394409 CAAGGGGAGGGCTCCGGTAGCGGGAAGACGCCCACTTACGACCTGCAGCGGCTGTATGAA 394468 Query 249790 ACGGCGAAACAGGCGATCAAAAACCTCAACAAGGTGATTGATGTCAATTTTTACCCCCTT 249849 | |||| || || |||||| ||| || || || |||| | ||||| | Sbjct 394469 ATCACGAAGGTGGTGACACGAAACCTGAACCGCGTCATAGACATCAACTACTACCCTGTC 394528 Query 249850 GAGGAATGCAGGTTGTCCAACATGAAGCACCGTCCATGTGGGCTGGGCGTTCAGGCACTG 249909 |||||| |||| || |||||| ||||| || ||| | ||||| |||| || Sbjct 394529 GAGGAAGCCAGGCGCTCGAACATGCGACACCGCCCCATCGGGATCGGCGTGCAGGGTTTG 394588 Query 249910 CACGACGTCTACATGGTGATGGGATTCCCCTTCGAGTCAGAGGAGGCAGCGACGCTAAAT 249969 |||| || ||| |||| ||||||| |||||||| |||||| | ||| || Sbjct 394589 GCGGACGCCTTCATCAAGATGCGATTCCCATTCGAGTCTCCGGAGGCCCAGCAGCTTAAC 394648 Query 249970 AAACAGATTTTCGAGACCATCTATCACGGGAGCGTCGAGGCGTCCATCGAAAGGGCCAAG 250029 || | |||||||||||||| || |||| || |||||||| || || | || | | Sbjct 394649 AAGGACATTTTCGAGACCATGTACTTCGGGGCGGTAGAGGCGTCGATGGAGATCGCGATG 394708 Query 250030 ATCGACGGACCATACGAGA 250048 | || || || ||||||| Sbjct 394709 AAGGAGGGTCCCTACGAGA 394727 >seq29 Length=316797 Score = 86.0 bits (94), Expect = 1e-11 Identities = 184/273 (67%), Gaps = 4/273 (1%) Strand=Plus/Minus Query 248430 CAAGCGGGACGGGCGCAAAGAAAACGTTCTCTTCGACAAAATCTCGGCGCGCATCAAGAA 248489 ||||||||||||||| | ||| || ||||||||| ||| || |||| | | Sbjct 132108 CAAGCGGGACGGGCGAAGAGAGCCGGTGGCCTTCGACAAGATCACGAAGCGCCTGCGCAG 132049 Query 248490 GCTCTGTTATGGTCTGGAACCCAACTTCGTCGATCATGTGGCCAT--CGCCCAGAAAGTT 248547 || || | |||||| | | ||| || |||| | ||| | ||||||||| ||| Sbjct 132048 CCTTTGCAAGGGTCTGAATACAGACTATGTGGATCCAG--GCCGTGTCGCCCAGAAGGTT 131991 Query 248548 ATTTCGGGCGTCTACACCGGAGTAACAACGACAGAACTGGACACCTTAGCTGCGGAGACG 248607 || ||| | || | ||| || | ||| | || || |||| |||| ||||||||| Sbjct 131990 GTTCAAGGCATGTATAACGGCGTTTCCACGGCCGAGCTTGACAATCTAGCGGCGGAGACG 131931 Query 248608 GCGGCGTACATGGCGATTGCACACCCCGACTACTCGCTGCTGGCCGGGAGGATCGCCGTC 248667 ||||| ||| || || | || ||||||||| ||| ||| || | | | ||||| Sbjct 131930 GCGGCCTACTTGAATATCGATCATCCCGACTACGCGCGGCTCGCAGCCCGTGTGTCCGTC 131871 Query 248668 TCAAGGCTTCACAAAGAAACGAAAGAGTCGTTC 248700 || | || |||||||| || || ||||||| Sbjct 131870 TCCAACCTGCACAAAGAGACCAATCCGTCGTTC 131838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073756989779712