Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq6 325 4e-84 seq29 248 8e-61 >seq6 Length=1241202 Score = 325 bits (360), Expect = 4e-84 Identities = 1241/1928 (64%), Gaps = 76/1928 (4%) Strand=Plus/Minus Query 22104 TCTTGTCCACTGTAAACTGTATGGCGTTTGC----GGCCGGTTTGGTGCGAAGATAATAC 22159 |||| ||||| || ||||||||||| | || |||||| || || || || ||| Sbjct 395327 TCTTATCCACCGTGAACTGTATGGCATCCGCCTTGGGCCGG----GTCCGTAGGTAGTAC 395272 Query 22160 ATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAA 22219 ||||| ||||| || ||| ||||||| | || || || || || || | | | || Sbjct 395271 ATGCCGGTCTTGAGCCCCTTCTTCCAGGAATAGAAGTGCATGGAGGTGAGCTGTGCAGGC 395212 Query 22220 CTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCG 22279 |||| | ||| | | ||||| ||||| |||| ||| | || || || ||| Sbjct 395211 GTCGGATTGGCCAAATGGATATTGAGAGACTGCGACTGACAGATGTAGGCGCCGCGGTCG 395152 Query 22280 GCGGCCATATTTATCAATGTACGCA--TCGAC---ATTTCCCATACGGTCTTGTACAGTT 22334 |||||| | |||| |||| || | || ||||| || ||||||||||| | Sbjct 395151 GCGGCCTGGTCGATCA-----CGCACTTCTGCCGGATCTCCCACACTGTCTTGTACAGGT 395097 Query 22335 GCCTGATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCA 22394 | ||| ||| || || | | ||||||| || || | ||| || || Sbjct 395096 CCTTGAGCTCCCGAGGGATGCTGGCCACATTCTGGACTGAGCCCCTGTTGCCCATAATTT 395037 Query 22395 AATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGT 22454 |||| | | |||||| || | || | | || || ||| | || Sbjct 395036 GATTTCGGACTTCAGAAGTCCACAGGCCTTGGTCGATGAGGTCGCGGAGCAGGTACTTGT 394977 Query 22455 TCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTT 22514 ||||||| || ||||| | ||| ||||| || ||| ||||| |||||||| || | Sbjct 394976 TCACCACCGTGAATTCGCCCGCCAACACGCGACGGGAGTACATGTTCGATGTGAAAGGCT 394917 Query 22515 CGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACA 22574 | | ||| || ||||| ||||| ||||| || || || ||||| ||||| || || | || Sbjct 394916 CAACAGACTCGTTGTTGCCCAGGATCTGCGCAGTAGATGCGGTAGGCATGGGTGCGAGCA 394857 Query 22575 GTAGCGAGTTTCTCAAGCCGTGCTT-TGAAATTTTACTCTTGAGCATCGACCAGTCCCAC 22633 ||| ||||| | | ||||||| || | ||| | | | | | | ||||||||| Sbjct 394856 ATAGTGAGTTGCGGACACCGTGCTCCTGCACTTTGAAGCGTAAACCG-GCCCAGTCCCAG 394798 Query 22634 AGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGG 22693 || || || ||||| | ||||||| ||| |||| || ||||| ||| ||| Sbjct 394797 CGAGTTGAGGGGGTCAC---GCCCCACATGTCGAATTGGAAGACGCCCTTGCTCATGGGG 394741 Query 22694 CTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCT-CGCCTCCAA 22752 ||| || | || ||||| ||||| | || || | || || | |||||| | Sbjct 394740 GAGCCGGCGAAGGTCTCGTAGGGACCCTCCTTCATCGCGATCTC-CATCGACGCCTCTAC 394682 Query 22753 CGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGC----GGCGACGC 22808 ||| ||| | || || |||||||| || | |||||| | | ||| || ||| Sbjct 394681 CGCCCCGAAGTACATGGTCTCGAAAATGTCCTTGTTAAGCTGCTGGGCCTCCGGAGAC-- 394624 Query 22809 TTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGA 22868 ||| | || | |||||| | | ||| |||||||||| |||||| ||||| || |||| Sbjct 394623 --TCGAATGGGAATCGCATCTTGATGAAGGCGTCCGCCAAACCCTGCACGCCGATCCCGA 394566 Query 22869 TCGGTCGGTTTTTCAGATTCGA-CACTTT--TGCCTCGGGCAAAGGATACCAATTCGAAT 22925 | || |||| | || ||||| | | | | ||||| | ||| || | || | Sbjct 394565 TGGGGCGGTGTCGCATGTTCGAGCGCCTGGCTTCCTCG---ACAGGGTAGTAGTTGATGT 394509 Query 22926 CGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGT 22985 | || | ||||| ||||| ||||| | ||||| || | | || Sbjct 394508 CTATGACGCGGTTCAGGTTTCGTGTCACCACCTTCGTGATTTCATACAGCCGCTGCAGGT 394449 Query 22986 CGTAAACGCCCGATTGTAC---AACAAA--------CTTGT-TGACGGCGA------TC- 23026 ||||| | || | | | | | |||| ||| ||| || Sbjct 394448 CGTAAGTGGGCGTCTTCCCGCTACCGGAGCCCTCCCCTTGGATGAATGCGGAAAGGTTCA 394389 Query 23027 --GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTAC 23084 ||||| || ||||| || || ||||| || ||||||||||| | || || || | Sbjct 394388 CGGAGGCCAGGTTGCAGACCGCGACCTCATCGGGCGACGTGTACTCGATGATCTCCGTGC 394329 Query 23085 ATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAAT 23144 | |||||| | || || |||||||| || |||||| ||| | ||||| | | Sbjct 394328 ACAGATTGGATGATTTGATGGTGCCCAAGTTCTGCTGGTTTGATTTCAGGTTGCAGGCGT 394269 Query 23145 CCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 ||||| | |||||||| |||||||| ||||| ||||| || || | ||||| ||| | Sbjct 394268 CCTTGAACAGCATGTAAGGCGTGCCTGTCTCCACCTGGGAGTCCAGAATCGCGAACCAGA 394209 Query 23205 TAGTCTGAGCGTGAACA-CGTCGCACGTACCTGCCTTCT-TCCTCGTACTTTTGGTACAA 23262 ||| || | || | | | || || | | || || | |||||| | ||| | Sbjct 394208 GCTGCTGGGCCTTAATAACCTTGC--GTGCTTTCCCACTCTTCTCGTAGCTGGCGTAGAG 394151 Query 23263 CGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAG 23322 | || ||| || | ||| | ||| |||||||| || | | | || || | || Sbjct 394150 CTGGTTAAACTCCTCGCCGCACACGTCCGCCAGGCCCGGGCACTCGTTGGGGCAAAAAAG 394091 Query 23323 ACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTA 23382 ||| ||| | || ||||| | ||| || || || || |||| || ||||| Sbjct 394090 GGACCAGTCCCCGTCGCTCTCCACGCGCCGCATGAACAGGTCGGGCGTCCAGAGGGCGTA 394031 Query 23383 GAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTC 23442 |||||| || || || ||| || ||| |||||| |||||| || |||| || || Sbjct 394030 GAACAGATCACGTGCACGCTCCAACTCGTTGCCGTGGTTCTTACGCAGGTCCAGGAATTC 393971 Query 23443 CAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCC 23502 || | ||| |||||||| ||||| ||||| | ||| || | ||| | ||| || Sbjct 393970 AAAGATGTCTGCATGCCAGGGCTCTAGGTAGATGGCGAAGGAACCCTTGCGCTTGCCTCC 393911 Query 23503 GCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTT 23562 |||||| |||||||| |||||||| | |||| | || | ||||| || |||| ||||| Sbjct 393910 GCCCTGGTCGACGTAGCGGGCCGTATCGTTGAAAACGCGGAGCATAGGTACGATGCCGTT 393851 Query 23563 GGACGCGCCGCCTACGC-CCGCCACACTCGAAC-CTTTTGCTCGAACGTTGTGAACGTGG 23620 ||| | |||| | || || | | | | | || || |||| |||||| | ||| Sbjct 393850 GGAGGTGCCG--TTCGATCCACGAATGTAGGAGTCTCGCGCCCGAATGTTGTGGA--TGG 393795 Query 23621 AAAC--CTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGA 23678 | || | || || || | |||| || || |||||||| || || |||||||||| Sbjct 393794 ATACGCCAATCCCACCCGCAAATTTGGAAATGGCAGCGCATTGCTTGAGGGTGTCGTAGA 393735 Query 23679 TGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGG 23738 |||| |||||| |||||| || | | | | ||| || || || | ||| | | Sbjct 393734 TGCCGTCGATGGAGTCCTCCTTCATGGTCAGGAGGAAGCAGGAGGAGAGTTGGGGCCGCG 393675 Query 23739 GCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGT--AAAGTATCCATTCGACATTAG 23796 | || |||| ||| ||||| || | || ||||| ||||| | |||||| || Sbjct 393674 GTGTGCCGGCATTGAAAAGTGTAGGCGTAGCATGCGTGAAAAGTTT--GAGCGACATGAG 393617 Query 23797 ATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCAT 23856 |||||| || || | || || ||||||| |||| ||| ||||| || || || ||||| Sbjct 393616 ATTGTAGGTCTCCAGCGCCGCGTCAATGTTCTCTTTGTGGATACCAATTGCCACACGCAT 393557 Query 23857 CATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTG 23916 ||||||| || || | ||| | || ||||| || || | || || || || Sbjct 393556 GATCATGTGCTGGGGGCGCTCCATAACTACCCCGTTCATCTTAAGAAGGTACGACTTTTC 393497 Query 23917 CATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976 || ||||||||| ||||| |||||||| | |||||| || || | | || | ||| || Sbjct 393496 CAGCGTTTTAAAGCCAAAGTAGTCATAATCAAAGTCCCGGTCATAAATAATTGACGAGTT 393437 Query 23977 CAAACGGT 23984 || |||| Sbjct 393436 CAGGCGGT 393429 >seq29 Length=316797 Score = 248 bits (274), Expect = 8e-61 Identities = 630/944 (67%), Gaps = 16/944 (2%) Strand=Plus/Plus Query 23026 CGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACA 23085 ||| || || ||||| || |||||||| || | |||||| | || || ||||| || Sbjct 130776 CGACGCCAGGTTGCAGACCGCCACCTCTTCCGCGCTCGTGTATTGGACGATCTCGGTGCA 130835 Query 23086 TAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATC 23145 ||||| |||| || |||||||| || |||||||| || | ||||| | || Sbjct 130836 CAGATTCGAGGACTTGATGGTGCCCAAGTTCTGTTGGTTGCTCTTCAGGTTGCAAGCGTC 130895 Query 23146 CTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACAT 23205 |||||| |||||||| |||||||||||||| | |||||| || | ||| || ||||| Sbjct 130896 CTTGTACAGCATGTAGGGCGTGCCCGTCTCAATCTGCGAGTCCAAGATGGCAAACCACA- 130954 Query 23206 AGTC-TGAGCGTGAACACGTCGCACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTACAAC 23263 |||| ||||| | || ||| || | ||| ||| ||||| ||| || | Sbjct 130955 AGTCCTGAGCACGCACT-GTCTTCTTGACTCGGCCCTCTCGTTCGTATTTTAAATATAGG 131013 Query 23264 GCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGG-ACACATGAG 23322 | || | |||| ||||| || || ||||| | || ||||| ||||||||| Sbjct 131014 TCCCGGAAGGCCTGGCCGTGGCAGTCCGCGAGACCGGGGCACTG-ATCGGGACACATGAG 131072 Query 23323 ACTCCACATTGAGTCATTTTCAACGCGTCTC-ATAAAAAGATCCGGTATCCATAGAGCGT 23381 ||| | || | || || | |||| || || || || || |||||||| | | Sbjct 131073 GGACCAGGTCCCATCCTCCTCCACCC-TCTCCATGAAGAGGTCGGGAATCCATAGTCCAT 131131 Query 23382 AGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGT 23441 |||| || || || || ||| ||||||| || ||| |||||| || |||| | | Sbjct 131132 AGAAGAGATCCCGCGCCCGCGCCTCCTCCTTTCCGTGGTTCTTCCGCAGGTCCAGCACTT 131191 Query 23442 CCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGC 23501 | || | |||||| ||||||||||| ||||| | |||||| || || || ||||| | Sbjct 131192 CAAAGATGTCCGCGTGCCACGGCTCCAGGTAGATGGCAAAGGCCCCTGGCCTCTTGCCTC 131251 Query 23502 CGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGT 23561 | ||||| || ||||| || |||||| || | | || || ||||| ||||| ||||||| Sbjct 131252 CCCCCTGGTCCACGTAGCGCGCCGTGACGTCGAAGACCCTGAGCATGGGCACCAGACCGT 131311 Query 23562 TGGACGCGCCGCCTAC--GCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTG 23619 || | || | ||| | |||| | | || | || || | |||||| || Sbjct 131312 TG--CTCGTCCCCTTCGTGCCCTTAATGTAGGCGCCGTGCGCGCGGATGTTGTGGACCGA 131369 Query 23620 GAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGAT 23679 || || || || || ||| || ||||| ||||| || ||||| ||||||||||| Sbjct 131370 GAGGCCGATTCCCCCCGCCGCCTTGCTTATCACGGCGCACTGCTTCAGCGTGTCGTAGAT 131429 Query 23680 GCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGG 23739 || |||| |||| ||| | || | | ||| ||||| ||||| |||| | Sbjct 131430 ACCAACGATCGAGTCCGCTTGCATGGCCAGGAGGAAGCACGAGGACATCTGCGGGAAACG 131489 Query 23740 CGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATT 23799 ||| | || ||| || || ||| |||||| | || | || ||| || | Sbjct 131490 CGTGCCCGCGTGGAAAAGAGTAGGGGAGGCGTGGATGAACCACTTGTTGCTCATGAGCTC 131549 Query 23800 GTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCAT 23859 ||| || || | |||||| | |||||||| || ||||| | ||| ||||||| | Sbjct 131550 GTAGGTCTCCAAGGCGGCGGGCAGATCCTCTCCATGGATACCAAGGGCAACGCGCAGAAG 131609 Query 23860 CATGTATTGAGGTCTCTCGAC--CGTGACGCCGTTAATTTTGAACAGATATGAACGTTGC 23917 |||||| || || | ||| || | | |||| || || | || || | |||| | Sbjct 131610 CATGTACTGCGGGCGCTCCACCACCTTGCGCC--CGATCTTCAGCAAGTAGGCTCGTTCC 131667 Query 23918 ATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTG 23961 || ||||| || || ||||||||| || | | || || ||||| Sbjct 131668 ATGGTTTTGAAGCCGAAATAGTCAAAGAAATAATCGCGCTCGTG 131711 Score = 89.7 bits (98), Expect = 5e-13 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 22107 TGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCCG 22166 |||| || || || || ||||||||||| || |||||||| || | ||| ||||| || | Sbjct 129590 TGTCGACGGTGAATTGAATGGCGTTTGCTGCGGGTTTGGTTCGCAAATAGTACATACCTG 129649 Query 22167 TCTTCAGACCCATCTTCCACGCGTAAAAATGTAT 22200 |||| |||||| ||||||| |||||||||| || Sbjct 129650 TCTTGAGACCCCTCTTCCAGCCGTAAAAATGCAT 129683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445762588697280