Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq25 154 3e-32 seq6 87.8 4e-12 >seq25 Length=633890 Score = 154 bits (170), Expect = 3e-32 Identities = 408/617 (66%), Gaps = 6/617 (1%) Strand=Plus/Plus Query 35165 ACAGGAACTCTATCCATTTTTGGACCCCAAATGAGGTTCTCTCTTCGAGACGACACTATT 35224 ||||| || || || | ||||| |||| | |||| || || || || || || || Sbjct 455681 ACAGGCACCCTCTCAAAATTTGGCGCCCAGCTTCGGTTTTCCCTGCGTGATGAGACCTTT 455740 Query 35225 CCAGTTCTCACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGGTTC 35284 || | ||||| |||||| | || ||| | || || | |||||||||| ||||||| Sbjct 455741 CCCTTGCTCACCACCAAGCGGGTCTTTTGGCGCGGGGTGGCCGAAGAACTCTTGTGGTTC 455800 Query 35285 ATCAGGGGCAATACAGACGCCAAAGAATTGGCCAAGAAGAAGATACACATCTGGAACGCT 35344 ||| || || || || || | ||| |||| || || |||||| ||| Sbjct 455801 ATCTCCGGATCGACCGATGCGAATTATTTGAAGGAGAAAAAAATTGGAATCTGGGACGGG 455860 Query 35345 AATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCAGAGGGAGATTTG 35404 || || ||||||| | |||||| || | | | | | |||||| |||||| Sbjct 455861 AACTCCTCTCGGGAATATCTGGACAAATTGGGCCTTTCTCACCGGGAAGAGGGGGATTTG 455920 Query 35405 GGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGAT-ACCTGTTCTTC 35463 || ||||| ||||| ||||||||||| ||||| || || || ||| || || | | Sbjct 455921 GGCCCCGTCTACGGCTTCCAATGGCGGCATTTCGGGGCGGAGTATTCGGACATGCACG-C 455979 Query 35464 CGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCTGAGAGAAAA 35523 || || ||||| || || || || || ||||| | | | ||| | | || || Sbjct 455980 AGACTACACTGGCAAAGGCATCGACCAGTTGGCTCGGGCAATCACCACCATCAAGGACAA 456039 Query 35524 TCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGC 35583 ||||| ||| | | || ||| | |||| ||||| || |||| | ||||| Sbjct 456040 CCCAGAGGATCGCCGCATCATTGTATCGGCCTGGAACCCCGCGGATTTGGGAAAGATGGC 456099 Query 35584 TCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGTCGTGCCA 35643 || || || || |||||| | ||||| || ||||| | ||||| | || || || Sbjct 456100 CCTGCCGCCGTGTCACATGTTTTGCCAATTCTACGTGGCAGACGGAGAGCTCTCTTGTCA 456159 Query 35644 GTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCATACTC 35703 | |||||||||| || ||| | |||||||| ||||| ||||||||||| || ||| | Sbjct 456160 GATGTATCAGCGTTCCGCAGACATGGGGTTGGGTGTGCCGTTCAATATTGCCTCTTACGC 456219 Query 35704 TCTTCTGACTCATCTGATGG--CCAGTATGGTGGGTCTAAAACCGGGAGAGTTTATCCTC 35761 || |||| | || | | | ||| | |||| | | ||| | |||||||| || | | Sbjct 456220 ACTCTTGACACGCTTGGTAGCTCAAGTCT-GTGGCT-TGAAAGCCGGAGAGTTCATTCAC 456277 Query 35762 ACTCTTGGTGACGCACA 35778 || |||| || ||||| Sbjct 456278 ACGATTGGGGATGCACA 456294 >seq6 Length=1241202 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 93610 TACATGTTGGACGTTAAAGGCTCAAAGGATTCAGAGTTGCCCAGGATCTGTGCAGTGGAT 93669 |||||||| || || |||||||||| || || ||||||||||||||| ||||| ||| Sbjct 394938 TACATGTTCGATGTGAAAGGCTCAACAGACTCGTTGTTGCCCAGGATCTGCGCAGTAGAT 394879 Query 93670 GCAGTAGGCATGGGAGCAACAAACATTGAATTGTGAACACC 93710 || ||||||||||| || | || | ||| ||| | ||||| Sbjct 394878 GCGGTAGGCATGGGTGCGAGCAATAGTGAGTTGCGGACACC 394838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989575327533220