Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq25 109 5e-19 >seq25 Length=633890 Score = 109 bits (120), Expect = 5e-19 Identities = 177/255 (69%), Gaps = 0/255 (0%) Strand=Plus/Minus Query 20945 GTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTG 21004 ||| || || || || || | ||||| | || ||||| | ||| ||| ||| || Sbjct 456301 GTACACATGTGCATCCCCAATCGTGTGAATGAACTCTCCGGCTTTCAAGCCACAGACTTG 456242 Query 21005 AGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCAT 21064 ||| | || |||| ||| ||||| ||| || || ||||| || || | ||||| Sbjct 456241 AGCTACCAAGCGTGTCAAGAGTGCGTAAGAGGCAATATTGAACGGCACACCCAACCCCAT 456182 Query 21065 GTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACA 21124 ||| ||||| | ||| |||| ||| || || ||||| || |||||||| || || || Sbjct 456181 GTCTGCGGAACGCTGATACATCTGACAAGAGAGCTCTCCGTCTGCCACGTAGAATTGGCA 456122 Query 21125 CAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACAT 21184 || | |||||| || || || |||||| | | |||||||||||||| || | | Sbjct 456121 AAACATGTGACACGGCGGCAGGGCCATCTTTCCCAAATCCGCGGGGTTCCAGGCCGATAC 456062 Query 21185 AACGATGCGCCGATC 21199 || |||||| ||||| Sbjct 456061 AATGATGCGGCGATC 456047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427772433952320