Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_003444.1 Length=37074 Score E Sequences producing significant alignments: (Bits) Value seq502 96.9 8e-16 >seq502 Length=611 Score = 96.9 bits (106), Expect = 8e-16 Identities = 159/228 (70%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 8729 CGTCACAAGCTTGCCAGCGACGGTACCCGCTTTGGTC-CCGGTCAGGCGATTGTCACCCC 8787 || ||||||||||| | |||||| ||||| ||| | | |||| |||||||| ||||| || Sbjct 24 CGCCACAAGCTTGCGAACGACGGCACCCGTTTTTGCCGCCGGGCAGGCGATCGTCACGCC 83 Query 8788 GGCGGTAATCAAAGGGGAACTGCTGGCAACCTACCGTCAGCTTGAGCGTGCGGGGATCGT 8847 | |||| | || | || ||| | || || |||| ||| | ||| | || Sbjct 84 GTCGGTGCTGAAGGCCGAGCTGGTCGCGCTGATGCGCGAGCTCGAGGAGGGTGGGCTGGT 143 Query 8848 GGAAAACTACGAACTGTTTAAGCAGTACCTGGTTGTGGAGCGTGATGCCAGCGTTCCGAA 8907 || ||| ||| | ||| ||| ||||| | || ||||| ||||||| || |||| Sbjct 144 CGAGAACCTCGACCAGTTCAAGGCCGACCTGATCGTCGAGCGCGATGCCACCGACCCGAC 203 Query 8908 CCGCCTGAACACGCTGTTCCCGCCTGACTATGTTAACCAGTTGCGTGT 8955 |||| | ||| |||| ||||||| ||| || |||||| |||| || Sbjct 204 CCGCGTCAACGCGCTCGTCCCGCCCGACCTGGTGAACCAGCTGCGCGT 251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118514237360288