Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq29 132 7e-26 >seq29 Length=316797 Score = 132 bits (146), Expect = 7e-26 Identities = 364/555 (66%), Gaps = 2/555 (0%) Strand=Plus/Minus Query 96825 GGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGATACGTTACACAGGGCGGC 96884 || || ||||| |||||||| | | | | | | | | || ||||| ||||| || Sbjct 131309 GGTCTGGTGCCCATGCTCAGGGTCTTCGACGTCACGGCGCGCTACGTGGACCAGGGGGGA 131250 Query 96885 AATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGAC 96944 || ||||||| || | ||| ||||| |||| || |||||||||||| | ||||| Sbjct 131249 GGCAAGAGGCCAGGGGCCTTTGCCATCTACCTGGAGCCGTGGCACGCGGACATCTTTGAA 131190 Query 96945 TTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTAT 97004 | | || |||| || ||| || || ||||| || || |||| | || ||| Sbjct 131189 GTGCTGGACCTGCGGAAGAACCACGGAAAGGAGGAGGCGCGGGCGCGGGATCTCTTCTAT 131130 Query 97005 GCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTA 97064 | ||| ||| | || || | |||||| || | || | || | ||| |||| ||| Sbjct 131129 GGACTATGGATTCCCGACCTCTTCATGGAGAGGGTGGAGGAGGATGGGACCTGGTCCCTC 131070 Query 97065 ATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAG 97124 ||||| ||||| || |||||||| | || ||| ||| | | || || | Sbjct 131069 ATGTGTCCCGATCAGTGCCCCGGTCTCGCGGACTGCCACGGCCAGGCCTTCCGGGACCTA 131010 Query 97125 TACACGGCCTACGAGCAAGAGGGCCGATACGTGA-GACGAGTCGATGCACGAGAACTGTG 97183 || ||||| | |||||||||| | || ||| ||| ||| | || |||| Sbjct 131009 TATTTAAAATACGAACGAGAGGGCCGAGTCAAGAAGAC-AGTGCGTGCTCAGGACTTGTG 130951 Query 97184 GAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATAC 97243 | |||||| || | ||| | ||||| || || || ||||| || |||||||| | Sbjct 130950 GTTTGCCATCTTGGACTCGCAGATTGAGACGGGCACGCCCTACATGCTGTACAAGGACGC 130891 Query 97244 CGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCAC 97303 || | || |||||||||| ||||||||||||||||| ||| ||||||||||| Sbjct 130890 TTGCAACCTGAAGAGCAACCAACAGAACTTGGGCACCATCAAGTCCTCGAATCTGTGCAC 130831 Query 97304 GGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATCGGTCAA 97363 || || || | ||| | |||| ||| ||| || ||| ||||| ||||| Sbjct 130830 CGAGATCGTCCAATACACGAGCGCGGAAGAGGTGGCGGTCTGCAACCTGGCGTCGGTGGT 130771 Query 97364 TCTGCCCAAGTTTGT 97378 || ||||| || || Sbjct 130770 GCTACCCAAATTCGT 130756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741052863943840