Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq25 147 1e-30 >seq25 Length=633890 Score = 147 bits (162), Expect = 1e-30 Identities = 326/485 (67%), Gaps = 17/485 (4%) Strand=Plus/Minus Query 25422 TTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCT 25481 ||||||| ||||| |||| |||||| || || || || || | ||||| | |||||| Sbjct 456324 TTCAGCGCGTCTACATGATTCAGGTACACATGTGCATCCCCAATCGTGTGAATGAACTCT 456265 Query 25482 CCCGGTT-CTAGCC-CGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGA 25539 || | || | |||| | | || | ||| | || | || | ||| ||| ||| | Sbjct 456264 CCGGCTTTCAAGCCACAG--ACTTGAGCTACCAAGCGTGTCAAGAGTGCGTAAGAGGCAA 456207 Query 25540 TGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGC 25599 | || || || || || ||||||||||| | || | ||| || | |||||| |||||| Sbjct 456206 TATTGAACGGCACACCCAACCCCATGTCTGCG-GAACGCTGATACATCTGACAAGAGAGC 456148 Query 25600 TCTTCGTCGCTCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAGGCCC 25659 ||| |||| |||||| || || || | ||| ||||| || || || || ||| Sbjct 456147 TCTCCGTCTGCCACGTAGAATTGGCAAAACATGTGACACGGCGGCAGGGCCATCTTTCCC 456088 Query 25660 AAGTCTTTAGGGTTCCAGGCGCACACGATGATGCACCTGTCTTCTGGGTTGTCCCTGATA 25719 || || ||||||||||| | || ||||||| | || |||||||||||| |||| Sbjct 456087 AAATCCGCGGGGTTCCAGGCCGATACAATGATGCGGCGATCCTCTGGGTTGTCCTTGAT- 456029 Query 25720 AGATCCGCGGTGTTT------TGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTC 25773 | |||| || || ||| || | || | || | ||||||||| | Sbjct 456028 -----GGTGGTGATTGCCCGAGCCAACTGGTCGATGCCTTTGCCAGTGTAGTCTGCGTGC 455974 Query 25774 ATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCT 25833 ||||||| ||||| || ||||||| || ||| ||||| ||||| || || || | || Sbjct 455973 ATGTCCGAATACTCCGCCCCGAAATGCCGCCATTGGAAGCCGTAGACGGGGCCCAAATCC 455914 Query 25834 CCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCC 25893 || ||||||| ||| || |||| || |||| | | || | || || ||||| Sbjct 455913 CCCTCTTCCCGGTGAGAAAGGCCCAATTTGTCCAGATATTCCCGAGAGGAGTTCCCGTCC 455854 Query 25894 CAGAT 25898 ||||| Sbjct 455853 CAGAT 455849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340134764527932