Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq4 107 2e-18 seq3 86.0 5e-12 >seq4 Length=1364975 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || ||||| | | || ||||| || || ||| || ||||||||||| |||| Sbjct 829194 ACCGCCACGCAATCGCAGGACCAAATGTAGGGTAGACTCTTTCTGAATGTTGTAGTCAGA 829253 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| ||| |||||||||||||||| || | |||| | ||||||||||| || Sbjct 829254 CAACGTGCGCCCGTCCTCCAGCTGCTTCCCCGCAAAAATGAGGCGCTGCTGATCAGGGGG 829313 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | || ||||||||| ||| |||||||| | | | | || || || | | |||| Sbjct 829314 GATACCCTCCTTGTCCTGAATCTTCTGCTTCACATTCTCGATCGTGTCACTGGGCTCCAC 829373 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 |||| || ||||| || || || || || || ||||| || |||||| || Sbjct 829374 GTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTAACAAAGATTTGCATCCTG 829425 >seq3 Length=1384164 Score = 86.0 bits (94), Expect = 5e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||| || ||||||||||| |||| || || |||| ||||||||||| || || | Sbjct 138203 CTCTTTCTGAATGTTGTAGTCAGACAGCGTGCGTCCGTCTTCCAGCTGCTTTCCTGCGAA 138144 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 ||||| ||||||||||| || | | |||||||| ||| || ||||| | | Sbjct 138143 AATTAGGCGCTGCTGATCGGGGGGAATGCCCTCCTTGTCTTGAATCTTTTGCTTCACATT 138084 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||||||| | | ||| || | ||| ||||| || || || || || || || Sbjct 138083 TTCGATGGTATCGCTGGGCTCGACATCCAATGTGATGGTCTTGCCCGTCAGGGTCTTGAC 138024 Query 48715 AAAAATCTGCATCGT 48729 || |||||||| || Sbjct 138023 GAAGATCTGCATGGT 138009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421247688344684