Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_005882.1 Length=36748 Score E Sequences producing significant alignments: (Bits) Value seq469 138 3e-28 >seq469 Length=644 Score = 138 bits (152), Expect = 3e-28 Identities = 249/362 (69%), Gaps = 9/362 (2%) Strand=Plus/Plus Query 14495 ACGTTTGGTACGTCGGTTACAACAAAGACATGGCGCAGGAGTTCATCCGGGACTGCGCCG 14554 |||| |||||| | ||||| |||| |||||| | | || || ||| || |||||| Sbjct 49 ACGTCTGGTACATGGGTTATGACAAGGACATGACCCTCGAATTTATCGAGGTCTGCGCGA 108 Query 14555 ACTGGGCCAAGTTCTACAGCCTCGCGGCCGACGAGATCGAAGAAACCGAAGAGGTCTTTC 14614 ||||| || |||| | ||| ||| ||||| ||| |||||||| || Sbjct 109 TGTGGGCGCGCGCCTTTGGCCTGGTCGCCAGCGATATCGAGGAA---GAAGAGGT---TC 162 Query 14615 AGGACAAGGATGGCGACAAGTCGATCCTCGCGTTCGTGATCCGCTTCGCGTCGGGCTTTC 14674 ||| || || || ||| | || ||| |||||||||||||||||| || | Sbjct 163 TGGA---GGCTGATGAGAAGGGCGTGAAAGCCTTCTCGATCCGCTTCGCGTCGGGTTTCC 219 Query 14675 GCGTCACGGCACTGTCGTCGCGCCCGTCCAACCTGCGCGGCAAGCAAGGCCGCGTGATCA 14734 || | || || || | || |||| | ||||||||||||| ||| ||| |||| Sbjct 220 GCATTACCGCGCTTCCCTCCGTCCCGCGCGCGTTGCGCGGCAAGCAGGGCATCGTCATCA 279 Query 14735 TCGACGAGGCAGCGTTCCACGAGCAGCTCGGCGAGCTGCTCAAGGCCGCGATGGCGCTGC 14794 |||||||||| ||||||||| || | | | ||| | ||||||| ||||||||| ||| Sbjct 280 TCGACGAGGCGGCGTTCCACAAGAATGTTGCCGAAGTAATCAAGGCGGCGATGGCGTTGC 339 Query 14795 TGATGTGGGGCGGTCAGGTTCACATCATTTCGACGCACGACGGCGTCGACAACGCGTTCA 14854 | || ||||| || ||||| | |||||||| ||||||||| | || |||||| Sbjct 340 TAATCTGGGGTGGGCAGGTCGTTGTGATTTCGACCCACGACGGCATTTCGAATCCGTTCA 399 Query 14855 AT 14856 || Sbjct 400 AT 401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117471045833680