Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq684 612 2e-170 >seq684 Length=114989 Score = 612 bits (678), Expect = 2e-170 Identities = 716/966 (74%), Gaps = 6/966 (1%) Strand=Plus/Plus Query 135365 TGGGAACAGTTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTT 135424 ||||| | |||||| ||| | || ||||| || ||||| | || | |||||||| Sbjct 68454 TGGGAGCGCTTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTC 68513 Query 135425 GGAACGCTGATGATTCCTACTCTTCTCGCAGCTGCTATCTGCTTTATTGTTGCTTTCATC 135484 || | ||||| ||||| | | ||||| | | |||||| || | ||||||||| Sbjct 68514 GGTGTTTTAATGATCCCTACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCATC 68573 Query 135485 GCTGCACCTCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTAC 135544 || |||||||| || ||||| || || ||||| ||||| || ||||| || || | ||| Sbjct 68574 GCAGCACCTCCAGTAGATATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATAC 68633 Query 135545 GGAAATAACATCATCTCTGGTGCTGTTATCCC---TTCTAGCAACGCCATCGGCCTTCAC 135601 ||||| ||||| ||| | ||||| ||||| || |||| ||||| || || ||||| Sbjct 68634 GGAAACAACATTATCACAGGTGCGGTTATTCCAAGTTCT---AACGCTATTGGTATTCAC 68690 Query 135602 TTCTATCCCATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTAT 135661 ||||| || | ||||||||||| ||| | || || ||||| || || ||||||||||| Sbjct 68691 TTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGGCTTTACAACGGTGGTCCTTAC 68750 Query 135662 CAACTAGTGGTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAA 135721 ||||| || || || |||||| | | ||||| | |||||||| || || |||||| Sbjct 68751 CAACTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGCTACATGGGACGTGAATGGGAA 68810 Query 135722 CTCTCTTACCGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCC 135781 || ||||| | || ||||| |||||||||| || |||| |||||| || || || Sbjct 68811 CTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCT 68870 Query 135782 GCTGCTACTGCTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATG 135841 || || | ||| || ||| | | ||||| | ||||||||| ||| |||||||||| Sbjct 68871 GCAGCAAGTGCAGTATTCTTAATTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATG 68930 Query 135842 CCGCTTGGCATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACATT 135901 || | || || ||||| ||||| |||| |||| | || ||||| ||||||||||||||| Sbjct 68931 CCTTTAGGTATCTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATT 68990 Query 135902 CTCATGCATCCTTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCT 135961 || ||||| || ||||| ||| || |||||||| || || ||||| ||| | ||| | Sbjct 68991 CTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGT 69050 Query 135962 GCTATGCATGGATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGAGGTAGAATCC 136021 || ||||| || |||||||| || |||||| | | ||||| || || | | ||| Sbjct 69051 GCAATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGTGAAACTGAAGACGGTGTATCT 69110 Query 136022 CAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCAT 136081 ||||| |||||||| || || ||||||||||| ||||||||||| || ||||| || Sbjct 69111 GCTAACTACGGTTACAAATTTGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACAC 69170 Query 136082 GGTTACTTCGGTCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACAC 136141 |||||||| || ||| | ||||||||||| || ||||||||||| ||| | ||||| Sbjct 69171 GGTTACTTTGGACGTTTAATCTTCCAATACGCAAGTTTCAACAACTCACGTGCTTTACAC 69230 Query 136142 TTTTTCCTTGCTGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATCTACG 136201 || ||| | ||||||||||| ||||| ||||||||||| |||| || || | || Sbjct 69231 TTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGAATTAGCACA 69290 Query 136202 ATGGCGTTCAACCTCAATGGATTCAACTTCAACCAGTCCATTGTATCTTCTGAAGGTCGT 136261 ||||| |||||| | || ||||||||||||||||| || |||| | |||||||| Sbjct 69291 ATGGCATTCAACTTAAACGGATTCAACTTCAACCAATCAGTTGTTGATAGCCAAGGTCGT 69350 Query 136262 GTACTCAACACCTGGGCAGATGTGCTGAATCGTGCTGGTCTGGGTATGGAGGTGATGCAC 136321 || ||||||| ||||| || | | || ||||||| | | |||||||| || |||||| Sbjct 69351 GTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATGCAC 69410 Query 136322 GAGCGT 136327 || ||| Sbjct 69411 GAACGT 69416 Score = 598 bits (662), Expect = 5e-166 Identities = 739/1008 (73%), Gaps = 2/1008 (0%) Strand=Plus/Plus Query 137877 GATGACTGGATTAAACGAGATCGCTTTGTATTTGTGGGTTGGTCTGGACTACTACTTTTT 137936 ||||||||| | ||||||||||| || |||||| | |||||||| || || || | ||| Sbjct 37918 GATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGTCTTTTATTATTT 37977 Query 137937 CCCACTGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACAACGTTTGTTACAAGCTGG 137996 || || || | | | || ||||||| ||| | || || || || ||||||||| ||| Sbjct 37978 CCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTTGTTACATCTTGG 38037 Query 137997 TACACCCACGGGTTGGCGTCTAGTTATCTTGAAGGCGCTAATTTCCTCACAGCAGCTGTT 138056 ||||| || || || || ||| ||| | || || || ||| | || | |||||| Sbjct 38038 TACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGCAACTTCTTAACTGTAGCTGTA 38097 Query 138057 TCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAA 138116 || || ||||| || |||||||||||| | | || | ||||| || ||| | ||| Sbjct 38098 TCAACACCTGCAAATAGTATGGGTCATTCATTGATCTTATTATGGGGACCAGAGGCACAA 38157 Query 138117 GGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGG 138176 |||||| | || ||| | ||| | || ||| | ||||||||||| || | || ||| Sbjct 38158 GGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTTGTCGCATTACATGGG 38217 Query 138177 GCCTTTAGTCTGATTGGATTCATGCTT-CGCCAGTTTGAGATCTCTCGTCTGGTAGGCAT 138235 || ||| | | ||||||||| || || || || ||||| || ||||||| ||||| || Sbjct 38218 GCATTTGGATTAATTGGATTC-TGTTTACGACAATTTGAAATTGCTCGTCTTGTAGGTAT 38276 Query 138236 CCGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCGTGTTCCT 138295 ||||| || || ||||| ||||| || || || ||||| || ||||| || ||| | Sbjct 38277 TCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATTCGTTTCTGTATTCTT 38336 Query 138296 GATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCAGCAAT 138355 || |||||||| || ||| | ||||||||||||||||| ||||| || ||||| || Sbjct 38337 AATCTATCCTTTAGGACAAGCAAGTTGGTTCTTTGCTCCTAGTTTTGGAGTTGCAGCTAT 38396 Query 138356 CTTCCGATTCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCCTTTCATAT 138415 ||||||||||| || ||| | || ||||||||||||||||| || || || || || || Sbjct 38397 TTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCACAT 38456 Query 138416 GATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGGTGCTACAGT 138475 |||||| |||||||| ||| | |||||||| || | | ||| |||||||| ||||| || Sbjct 38457 GATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCTGCAATTCATGGAGCTACTGT 38516 Query 138476 AGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAAAGCATTTGAACCTAC 138535 |||||| || || | |||||||| || | ||||| || || || ||| || Sbjct 38517 AGAAAACACATTATTCGAAGATGGTGATGCTGCGAATACATTCCGTGCTTTCACACCAAC 38576 Query 138536 TCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGCAAATCTTTGG 138595 ||| ||||||||| ||||||||||| || || ||| | | |||||| ||||| ||||| Sbjct 38577 ACAATCAGAAGAAACTTATTCAATGGTAACAGCGAACAGATTCTGGTCTCAAATTTTTGG 38636 Query 138596 AATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCCGTCATGGG 138655 |||||||| ||| || ||||||||||| ||||| ||| | |||||||| || | || Sbjct 38637 TGTTGCTTTTTCTAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCAGTAACAGG 38696 Query 138656 TCTCTGGACTAGTAGTATTGGTATTATTGGTCTTGCTCTTAACCTACGAGCGTATGATTT 138715 | | ||||| ||| | ||||||| | ||| | || | ||| || |||| ||||| || Sbjct 38697 TTTATGGACAAGTTCTTTTGGTATAGTAGGTTTAGCATTAAACTTAAGAGCATATGACTT 38756 Query 138716 CGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACCTTCTACACCAAGAA 138775 ||||| ||||| |||||||||| |||||||| ||||| || || ||||| || || || Sbjct 38757 TGTATCTCAAGAGCTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTATACTAAAAA 38816 Query 138776 CATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGCTCCTGTGGATCAACCTCACGAAAA 138835 || | | || |||||| | | | |||||||| | ||| ||||| || ||||| Sbjct 38817 TATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAGGACCAACCACATGAAAA 38876 Query 138836 CTTTGTTTTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCTGTGATA 138883 ||||| || || || || || || ||| | || ||||| || | ||| Sbjct 38877 TTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAATA 38924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627962630873600