Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq684 517 3e-142 >seq684 Length=114989 Score = 517 bits (572), Expect = 3e-142 Identities = 699/974 (72%), Gaps = 0/974 (0%) Strand=Plus/Plus Query 19299 TGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCT 19358 ||| |||| || || || ||||| | || | |||||||| || || | ||||| ||| Sbjct 68472 TGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCT 68531 Query 19359 TGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGAT 19418 ||| || | ||||| | ||||| || |||| || ||||||||||| || |||||| Sbjct 68532 ACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGAT 68591 Query 19419 ATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCT 19478 || ||||| || ||||| ||||| | || || | | ||||||||||| ||||| | Sbjct 68592 ATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACA 68651 Query 19479 GGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCC 19538 || || || ||||||| || || || || || | ||||| || || | |||||||| Sbjct 68652 GGTGCGGTTATTCCAAGTTCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCT 68711 Query 19539 GGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTC 19598 | || |||| || ||| | |||||||| ||||| || |||||||| || || |||||| Sbjct 68712 GCGTCTGTAGACGAATGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTC 68771 Query 19599 TTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTAGGAATG 19658 ||| |||| ||||| ||| || | | |||||||| ||| | ||||| ||| Sbjct 68772 TTATTAGGTGTAGCTTGCTACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATG 68831 Query 19659 AGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTC 19718 | || ||||| |||||||| | |||| ||| || | ||||| ||| || || | Sbjct 68832 CGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCAGTATTCTTA 68891 Query 19719 GTTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACT 19778 |||||||| | || ||||| || || ||||||||||||| | ||||||||||||||| Sbjct 68892 ATTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACT 68951 Query 19779 TTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATG 19838 || ||||| ||||| |||||||||||||||||||| || |||||||| || ||||| ||| Sbjct 68952 TTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATG 69011 Query 19839 CTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTT 19898 ||||||||||| || || ||||||||| | ||| ||| |||||||| | | || Sbjct 69012 GCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGTGCAATGCACGGTTCTCTTGTA 69071 Query 19899 ACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTC 19958 || || | ||| ||||| || | |||||| ||||| || || || || Sbjct 69072 ACATCTAGTTTAATCCGTGAAACTGAAGACGGTGTATCTGCTAACTACGGTTACAAATTT 69131 Query 19959 GGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATA 20018 || ||||| ||||| || || || || || ||||||||||| |||||||| | || || Sbjct 69132 GGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATC 69191 Query 20019 TTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCC 20078 || ||||| || |||||| || || ||| ||||||| ||||| | ||| ||| || Sbjct 69192 TTCCAATACGCAAGTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCTTGGCCA 69251 Query 20079 GTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGT 20138 || || || || ||| | || | | ||||| |||| ||||| |||||| | || || Sbjct 69252 GTTGTAGGTATCTGGTTAACTGCTCTTGGAATTAGCACAATGGCATTCAACTTAAACGGA 69311 Query 20139 TTTAACTTTAACCAGTCAGTAGTTGATGTCAACGGAAAGATAATCCCAACATGGGCTGAT 20198 || ||||| ||||| ||||| |||||| | | || | ||| || |||||||| Sbjct 69312 TTCAACTTCAACCAATCAGTTGTTGATAGCCAAGGTCGTGTGATCAACACTTGGGCTGAC 69371 Query 20199 GTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAACTTC 20258 | | || | ||| | | || | ||||| |||||||| || || || || |||||| Sbjct 69372 ATTATCAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTC 69431 Query 20259 CCACTTGATTTAGC 20272 || || |||||||| Sbjct 69432 CCTCTAGATTTAGC 69445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144440426773104