Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq684 684 0.0 >seq684 Length=114989 Score = 684 bits (758), Expect = 0.0 Identities = 720/945 (76%), Gaps = 8/945 (1%) Strand=Plus/Plus Query 211612 GGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAGCTGCAACAACATGCTTTATCGTA 211671 |||||||| |||||| | |||||||| | || | || |||| ||||| ||| | Sbjct 68505 GGTTGGTTCGGTGTTTTAATGATCCCTACATTATTAACAGCTACAAGCTGCTTCATCATC 68564 Query 211672 GCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCA 211731 || ||||||||||||||||| || |||||||| || |||||||||||||| ||||| ||| Sbjct 68565 GCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAACCAGTGGCTGGATCA 68624 Query 211732 TTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGT 211791 | | || || |||||||| ||| | ||||| ||| ||||| ||| ||||| || ||| Sbjct 68625 CTTTTATACGGAAACAACATTATCACAGGTGCGGTTATTCCAAGTTCTAACGCTATTGGT 68684 Query 211792 TTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGT 211851 | |||||||| || | |||||||| || || | || || ||||| ||||| |||||| Sbjct 68685 ATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGGCTTTACAACGGTGGT 68744 Query 211852 CCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAG 211911 |||||||| | ||| | || |||||| | | || | | ||||||||| | | Sbjct 68745 CCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGCTACATGGGACGTGAA 68804 Query 211912 TGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCT 211971 ||||||||| ||||||||||| |||||||||||||| | || |||| ||||| || Sbjct 68805 TGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCA 68864 Query 211972 GTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGAC 212031 ||| | ||||| || |||||| | |||||||| |||| || ||| ||||| || Sbjct 68865 GTAGCTGCAGCAAGTGCAGTATTCTTAATTTACCCAATCGGACAAGGTAGCTTCTCTGAT 68924 Query 212032 GGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACAT 212091 ||||||||||||||||| || || || |||||||||||||| ||||||||||||||||| Sbjct 68925 GGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACAC 68984 Query 212092 AACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTA 212151 ||||| ||||||||||||||||||||||| |||||||| ||| |||| |||||| | ||| Sbjct 68985 AACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTA 69044 Query 212152 TTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAAC----CACTGG 212207 ||| ||| ||||||||||||||||| |||||| | ||||||||||| || || Sbjct 69045 TTCAGTGCAATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGTGAAACTGAAGAC-GG 69103 Query 212208 TTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGT 212267 | || || ||||| |||||||| || |||||||||||||| || || |||||||| Sbjct 69104 TGTA---TCTGCTAACTACGGTTACAAATTTGGACAAGAAGAAGAAACTTACAACATCGT 69160 Query 212268 TGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAG 212327 |||||||| || ||||| || | | |||||||| || ||| ||||||||| | Sbjct 69161 AGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCAAGTTTCAACAACTCACG 69220 Query 212328 AAGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGG 212387 ||||||||||||| | || | ||||| ||| | || | |||||||| || | || Sbjct 69221 TGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGG 69280 Query 212388 TATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGC 212447 || ||||||||||||||||| |||| |||||||||||||||||||||||||||||| Sbjct 69281 AATTAGCACAATGGCATTCAACTTAAACGGATTCAACTTCAACCAATCAGTTGTTGATAG 69340 Query 212448 ATCAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGA 212507 |||| || | ||||||| ||| || | ||| | || | | |||||||| Sbjct 69341 CCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGA 69400 Query 212508 AGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552 ||| ||||||||| | || || ||||||||||| || || ||||| Sbjct 69401 AGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGATTTAGC 69445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807548295403040