Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02-
18] 684 sequences; 27,589,342 total letters
Query= NC_006884.2
Length=178249
Score E
Sequences producing significant alignments: (Bits) Value
seq684 636 2e-177
>seq684
Length=114989
Score = 636 bits (704), Expect = 2e-177
Identities = 750/1002 (75%), Gaps = 20/1002 (2%)
Strand=Plus/Plus
Query 170686 CACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCATGTCTTCTAAC 170745
||| || || || | ||| | |||||||| ||||| ||||||||||| | ||||
Sbjct 68483 CACAGAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCTACATTATTAAC 68542
Query 170746 TGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAAT 170805
||| | || ||||| | || |||||||| || |||||||| |||||||| || ||
Sbjct 68543 AGCTACAAGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTAT 68602
Query 170806 CAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGT 170865
| | |||||||| || || || | ||||| || |||||||| ||| | ||||| || |
Sbjct 68603 CCGTGAACCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCGGTTAT 68662
Query 170866 TCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGA 170925
|||| ||| ||||| || || | |||||||| || | |||||||| || || | ||
Sbjct 68663 TCCAAGTTCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGA 68722
Query 170926 CGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATT-GGAA 170984
||| ||| | |||||||| ||||||||||| | || | || ||||| |||||| ||
Sbjct 68723 CGAATGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTT-CTTATTAGGTG 68781
Query 170985 TCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGA 171044
| || ||||||||| | | |||||||| ||| | |||| ||| | |||||||
Sbjct 68782 TAGCTTGCTACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGA 68841
Query 171045 TATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCAT 171104
| | ||||| | |||||| || ||| |||||||| |||||||||| | | || |||
Sbjct 68842 TTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCAGTATTCTTAATTTACCCAA 68901
Query 171105 TCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCA 171164
|||| || ||| ||||||||||||||||| |||||||||| ||||| ||||||||||
Sbjct 68902 TCGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCA 68961
Query 171165 TGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAG 171224
|||| || |||||||||||||||||||| || |||||||| ||||||||||| ||||| |
Sbjct 68962 TGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTG 69021
Query 171225 CAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTC 171284
| ||| |||| ||||| | | ||||||||||||||||||||||| || |||||| |
Sbjct 69022 CTGGTGTGTTTGGTGGATCTTTATTCAGTGCAATGCACGGTTCTCTTGTAACATCTAGTT 69081
Query 171285 TAATCAGAGAGACAACTG-AGAACGAGAGTC--AAAACTACGGCTATAAGTTCGGACAAG 171341
||||| | || ||||| ||| | | || |||||||| || || || |||||||
Sbjct 69082 TAATCCGTGA---AACTGAAGACGGTGTATCTGCTAACTACGGTTACAAATTTGGACAAG 69138
Query 171342 AAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGT 171401
|||||||||| || ||||| || ||||| || || ||||| || | ||||||||||| |
Sbjct 69139 AAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAAT 69198
Query 171402 ATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCT 171461
| ||| ||||||||||| ||| | |||||||||||| | |||| | || || ||
Sbjct 69199 ACGCAAGTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAG 69258
Query 171462 GTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACT 171521
|| | |||||||| || | || || | ||||||||||||||| | |||||||||||||
Sbjct 69259 GTATCTGGTTAACTGCTCTTGGAATTAGCACAATGGCATTCAACTTAAACGGATTCAACT 69318
Query 171522 TCAACCAATCAGTTGTAGAT-GCAAACGGAAAGATTGTACCAACA--TGGGGAGATGTTC 171578
|||||||||||||||| ||| || || | | || | ||||| |||| || ||
Sbjct 69319 TCAACCAATCAGTTGTTGATAGCCAA--GGTCGTGTG-ATCAACACTTGGGCTGACATTA 69375
Query 171579 TTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCAC 171638
| ||| | || | | || |||||||| ||||| ||| | || || ||||||||||| |
Sbjct 69376 TCAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTC 69435
Query 171639 TAGACCTAGC---ATCTGCTGAGTCTACAACAGTTGCATTAA 171677
|||| |||| |||| || ||| | ||||||||||||
Sbjct 69436 TAGATTTAGCGGTATCTAATG-TTCTTC--CAGTTGCATTAA 69474
Score = 592 bits (656), Expect = 2e-164
Identities = 767/1048 (73%), Gaps = 41/1048 (4%)
Strand=Plus/Plus
Query 171795 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 171854
|||||| | | ||||| |||||||| |||||||||||||||| || || ||||| |||
Sbjct 37906 TTTGACTTAGTCGATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGT 37965
Query 171855 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 171914
|||||| | || || || | || ||| | || || ||||| ||| ||||||||
Sbjct 37966 CTTTTATTATTTCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTT 38025
Query 171915 GTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTTTTTA 171974
|| || || |||||||||||||| | || || || || | |||||| ||||| |||
Sbjct 38026 GTTACATCTTGGTACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGCAACTTCTTA 38085
Query 171975 ACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTG---TTCCTATGG 172031
|||| ||| ||||||||||||| || |||||||||| || |||| || |||||
Sbjct 38086 ACTGTAGCTGTATCAACACCTGCAAATAGTATGGGTCAT--TC-ATTGATCTTATTATGG 38142
Query 172032 GGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTT 172091
||||| ||||||||||||||| || || ||| ||||| |||||||| |||||| |||
Sbjct 38143 GGACCAGAGGCACAAGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTT 38202
Query 172092 GTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTA-GACAGTTTGAGATTGC 172150
|| ||||||||||| | |||||| | || || ||| || ||| |||| ||||| |||||
Sbjct 38203 GTCGCATTACATGGGGCATTTGGATTAATTGGATTC-TGTTTACGACAATTTGAAATTGC 38261
Query 172151 AGGACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTATT 172210
| ||||| || || ||||| || || ||| | ||||| |||| | ||| ||||||||
Sbjct 38262 TCGTCTTGTAGGTATTCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATT 38321
Query 172211 CACGAGCATCT---TTC-TAATATATCCATTAGGTC-AGCATAGTTGGTTCTTCGCACCT 172265
| | ||| ||| |||| ||||| ||||| | |||| ||||||||||| || |||
Sbjct 38322 C----GTTTCTGTATTCTTAATCTATCCTTTAGGACAAGCA-AGTTGGTTCTTTGCTCCT 38376
Query 172266 TCATTTGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATA 172325
||||| || ||||| || || || | | |||||| |||| |||||||| ||
Sbjct 38377 AGTTTTGGAGTTGCAGCTATTTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGG 38436
Query 172326 ACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGT 172385
|| ||||||||||| || ||||||||||||||||| || | ||||| ||| || ||| |
Sbjct 38437 ACACTTAATCCATTCCACATGATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCT 38496
Query 172386 GCCATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAA 172445
|| || ||||| || || ||| | |||||||| | ||| ||
Sbjct 38497 GCAATTCATGGAGCTACTGTAGAAAACACATTATTCGAA------------------GAT 38538
Query 172446 GGTAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTTAT 172505
||| ||| | | | || ||| | || ||| || ||||| |||||||||||||
Sbjct 38539 GGT--GATGC-TGCGAATACATTCCGTGCTTTCACACCAACACAATCAGAAGAAACTTAT 38595
Query 172506 AGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAA 172565
||| | || || |||||||||||||| || || |||||| | || ||||| ||||||
Sbjct 38596 TCAATGGTAACAGCGAACAGATTCTGGTCTCAAATTTTTGGTGTTGCTTTTTCTAACAAA 38655
Query 172566 AGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATA 172625
| | | || ||| | ||||| || || || || | ||| | |||||| ||| |
Sbjct 38656 CGTTGGCTTCATTTCTTCATGTTATTTGTTCCAGTAACAGGTTTATGGACAAGTTCTTTT 38715
Query 172626 GGTATCGTAGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAAGA 172685
||||| |||||| | ||| | ||| | |||||||| |||||||||||||||||| | |
Sbjct 38716 GGTATAGTAGGTTTAGCATTAAACTTAAGAGCATATGACTTTGTATCTCAAGAGCTTCGT 38775
Query 172686 GCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTT-AATGAAGG 172744
||||| ||||| ||||| |||||||| ||||| ||||| || | |||| || || |||||
Sbjct 38776 GCAGCTGAAGATCCAGAATTTGAAACTTTCTATACTAAAAATA-TCTTATTAAACGAAGG 38834
Query 172745 TATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGA 172804
||| ||| |||||||| | | || ||||| ||||| || ||||| |||||||| ||
Sbjct 38835 TATTAGATCATGGATGGCCGCACAGGACCAACCACATGAAAATTTTGTATTCCCAGAGGA 38894
Query 172805 AGTCTTGCCACGAGGCAACGCACTATAA 172832
|| || ||||| || ||||| || |||
Sbjct 38895 GGTTTTACCACGTGGAAACGCCCTTTAA 38922
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570263924201760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |