Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq684 636 2e-177 >seq684 Length=114989 Score = 636 bits (704), Expect = 2e-177 Identities = 750/1002 (75%), Gaps = 20/1002 (2%) Strand=Plus/Plus Query 170686 CACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCATGTCTTCTAAC 170745 ||| || || || | ||| | |||||||| ||||| ||||||||||| | |||| Sbjct 68483 CACAGAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCTACATTATTAAC 68542 Query 170746 TGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAAT 170805 ||| | || ||||| | || |||||||| || |||||||| |||||||| || || Sbjct 68543 AGCTACAAGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTAT 68602 Query 170806 CAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGT 170865 | | |||||||| || || || | ||||| || |||||||| ||| | ||||| || | Sbjct 68603 CCGTGAACCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCGGTTAT 68662 Query 170866 TCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGA 170925 |||| ||| ||||| || || | |||||||| || | |||||||| || || | || Sbjct 68663 TCCAAGTTCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGA 68722 Query 170926 CGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATT-GGAA 170984 ||| ||| | |||||||| ||||||||||| | || | || ||||| |||||| || Sbjct 68723 CGAATGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTT-CTTATTAGGTG 68781 Query 170985 TCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGA 171044 | || ||||||||| | | |||||||| ||| | |||| ||| | ||||||| Sbjct 68782 TAGCTTGCTACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGA 68841 Query 171045 TATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCAT 171104 | | ||||| | |||||| || ||| |||||||| |||||||||| | | || ||| Sbjct 68842 TTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCAGTATTCTTAATTTACCCAA 68901 Query 171105 TCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCA 171164 |||| || ||| ||||||||||||||||| |||||||||| ||||| |||||||||| Sbjct 68902 TCGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCA 68961 Query 171165 TGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAG 171224 |||| || |||||||||||||||||||| || |||||||| ||||||||||| ||||| | Sbjct 68962 TGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTG 69021 Query 171225 CAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTC 171284 | ||| |||| ||||| | | ||||||||||||||||||||||| || |||||| | Sbjct 69022 CTGGTGTGTTTGGTGGATCTTTATTCAGTGCAATGCACGGTTCTCTTGTAACATCTAGTT 69081 Query 171285 TAATCAGAGAGACAACTG-AGAACGAGAGTC--AAAACTACGGCTATAAGTTCGGACAAG 171341 ||||| | || ||||| ||| | | || |||||||| || || || ||||||| Sbjct 69082 TAATCCGTGA---AACTGAAGACGGTGTATCTGCTAACTACGGTTACAAATTTGGACAAG 69138 Query 171342 AAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGT 171401 |||||||||| || ||||| || ||||| || || ||||| || | ||||||||||| | Sbjct 69139 AAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAAT 69198 Query 171402 ATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCT 171461 | ||| ||||||||||| ||| | |||||||||||| | |||| | || || || Sbjct 69199 ACGCAAGTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAG 69258 Query 171462 GTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACT 171521 || | |||||||| || | || || | ||||||||||||||| | ||||||||||||| Sbjct 69259 GTATCTGGTTAACTGCTCTTGGAATTAGCACAATGGCATTCAACTTAAACGGATTCAACT 69318 Query 171522 TCAACCAATCAGTTGTAGAT-GCAAACGGAAAGATTGTACCAACA--TGGGGAGATGTTC 171578 |||||||||||||||| ||| || || | | || | ||||| |||| || || Sbjct 69319 TCAACCAATCAGTTGTTGATAGCCAA--GGTCGTGTG-ATCAACACTTGGGCTGACATTA 69375 Query 171579 TTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCAC 171638 | ||| | || | | || |||||||| ||||| ||| | || || ||||||||||| | Sbjct 69376 TCAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTC 69435 Query 171639 TAGACCTAGC---ATCTGCTGAGTCTACAACAGTTGCATTAA 171677 |||| |||| |||| || ||| | |||||||||||| Sbjct 69436 TAGATTTAGCGGTATCTAATG-TTCTTC--CAGTTGCATTAA 69474 Score = 592 bits (656), Expect = 2e-164 Identities = 767/1048 (73%), Gaps = 41/1048 (4%) Strand=Plus/Plus Query 171795 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 171854 |||||| | | ||||| |||||||| |||||||||||||||| || || ||||| ||| Sbjct 37906 TTTGACTTAGTCGATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGT 37965 Query 171855 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 171914 |||||| | || || || | || ||| | || || ||||| ||| |||||||| Sbjct 37966 CTTTTATTATTTCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTT 38025 Query 171915 GTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTTTTTA 171974 || || || |||||||||||||| | || || || || | |||||| ||||| ||| Sbjct 38026 GTTACATCTTGGTACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGCAACTTCTTA 38085 Query 171975 ACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTG---TTCCTATGG 172031 |||| ||| ||||||||||||| || |||||||||| || |||| || ||||| Sbjct 38086 ACTGTAGCTGTATCAACACCTGCAAATAGTATGGGTCAT--TC-ATTGATCTTATTATGG 38142 Query 172032 GGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTT 172091 ||||| ||||||||||||||| || || ||| ||||| |||||||| |||||| ||| Sbjct 38143 GGACCAGAGGCACAAGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTT 38202 Query 172092 GTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTA-GACAGTTTGAGATTGC 172150 || ||||||||||| | |||||| | || || ||| || ||| |||| ||||| ||||| Sbjct 38203 GTCGCATTACATGGGGCATTTGGATTAATTGGATTC-TGTTTACGACAATTTGAAATTGC 38261 Query 172151 AGGACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTATT 172210 | ||||| || || ||||| || || ||| | ||||| |||| | ||| |||||||| Sbjct 38262 TCGTCTTGTAGGTATTCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATT 38321 Query 172211 CACGAGCATCT---TTC-TAATATATCCATTAGGTC-AGCATAGTTGGTTCTTCGCACCT 172265 | | ||| ||| |||| ||||| ||||| | |||| ||||||||||| || ||| Sbjct 38322 C----GTTTCTGTATTCTTAATCTATCCTTTAGGACAAGCA-AGTTGGTTCTTTGCTCCT 38376 Query 172266 TCATTTGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATA 172325 ||||| || ||||| || || || | | |||||| |||| |||||||| || Sbjct 38377 AGTTTTGGAGTTGCAGCTATTTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGG 38436 Query 172326 ACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGT 172385 || ||||||||||| || ||||||||||||||||| || | ||||| ||| || ||| | Sbjct 38437 ACACTTAATCCATTCCACATGATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCT 38496 Query 172386 GCCATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAA 172445 || || ||||| || || ||| | |||||||| | ||| || Sbjct 38497 GCAATTCATGGAGCTACTGTAGAAAACACATTATTCGAA------------------GAT 38538 Query 172446 GGTAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTTAT 172505 ||| ||| | | | || ||| | || ||| || ||||| ||||||||||||| Sbjct 38539 GGT--GATGC-TGCGAATACATTCCGTGCTTTCACACCAACACAATCAGAAGAAACTTAT 38595 Query 172506 AGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAA 172565 ||| | || || |||||||||||||| || || |||||| | || ||||| |||||| Sbjct 38596 TCAATGGTAACAGCGAACAGATTCTGGTCTCAAATTTTTGGTGTTGCTTTTTCTAACAAA 38655 Query 172566 AGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATA 172625 | | | || ||| | ||||| || || || || | ||| | |||||| ||| | Sbjct 38656 CGTTGGCTTCATTTCTTCATGTTATTTGTTCCAGTAACAGGTTTATGGACAAGTTCTTTT 38715 Query 172626 GGTATCGTAGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAAGA 172685 ||||| |||||| | ||| | ||| | |||||||| |||||||||||||||||| | | Sbjct 38716 GGTATAGTAGGTTTAGCATTAAACTTAAGAGCATATGACTTTGTATCTCAAGAGCTTCGT 38775 Query 172686 GCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTT-AATGAAGG 172744 ||||| ||||| ||||| |||||||| ||||| ||||| || | |||| || || ||||| Sbjct 38776 GCAGCTGAAGATCCAGAATTTGAAACTTTCTATACTAAAAATA-TCTTATTAAACGAAGG 38834 Query 172745 TATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGA 172804 ||| ||| |||||||| | | || ||||| ||||| || ||||| |||||||| || Sbjct 38835 TATTAGATCATGGATGGCCGCACAGGACCAACCACATGAAAATTTTGTATTCCCAGAGGA 38894 Query 172805 AGTCTTGCCACGAGGCAACGCACTATAA 172832 || || ||||| || ||||| || ||| Sbjct 38895 GGTTTTACCACGTGGAAACGCCCTTTAA 38922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570263924201760